| Managing, analysing, and integrating big data in medical bioinformatics: open problems and future perspectives I Merelli, H Pérez-Sánchez, S Gesing, D D’Agostino BioMed research international 2014, 2014 | 196 | 2014 |
| Precise gene editing preserves hematopoietic stem cell function following transient p53-mediated DNA damage response G Schiroli, A Conti, S Ferrari, L Della Volpe, A Jacob, L Albano, S Beretta, ... Cell stem cell 24 (4), 551-565. e8, 2019 | 165 | 2019 |
| A multilevel data integration resource for breast cancer study E Mosca, R Alfieri, I Merelli, F Viti, A Calabria, L Milanesi BMC systems biology 4 (1), 1-11, 2010 | 106 | 2010 |
| HIV-1-mediated insertional activation of STAT5B and BACH2 trigger viral reservoir in T regulatory cells D Cesana, FR Santoni de Sio, L Rudilosso, P Gallina, A Calabria, ... Nature communications 8 (1), 498, 2017 | 80 | 2017 |
| Grid-Enabled High-Throughput In Silico Screening Against Influenza A Neuraminidase HC Lee, J Salzemann, N Jacq, HY Chen, LY Ho, I Merelli, L Milanesi, ... IEEE transactions on nanobioscience 5 (4), 288-295, 2006 | 77 | 2006 |
| Efficient gene editing of human long-term hematopoietic stem cells validated by clonal tracking S Ferrari, A Jacob, S Beretta, G Unali, L Albano, V Vavassori, D Cittaro, ... Nature biotechnology 38 (11), 1298-1308, 2020 | 69 | 2020 |
| RSSsite: a reference database and prediction tool for the identification of cryptic Recombination Signal Sequences in human and murine genomes I Merelli, A Guffanti, M Fabbri, A Cocito, L Furia, U Grazini, RJ Bonnal, ... Nucleic acids research 38 (suppl_2), W262-W267, 2010 | 63 | 2010 |
| Molecular mechanism of allosteric communication in Hsp70 revealed by molecular dynamics simulations F Chiappori, I Merelli, G Colombo, L Milanesi, G Morra PLoS computational biology 8 (12), e1002844, 2012 | 58 | 2012 |
| Virtual screening on large scale grids N Jacq, V Breton, HY Chen, LY Ho, M Hofmann, V Kasam, HC Lee, ... Parallel Computing 33 (4-5), 289-301, 2007 | 53 | 2007 |
| DnaK as antibiotic target: hot spot residues analysis for differential inhibition of the bacterial protein in comparison with the human HSP70 F Chiappori, M Fumian, L Milanesi, I Merelli PLoS One 10 (4), e0124563, 2015 | 40 | 2015 |
| An atomistic view of Hsp70 allosteric crosstalk: from the nucleotide to the substrate binding domain and back F Chiappori, I Merelli, L Milanesi, G Colombo, G Morra Scientific Reports 6 (1), 1-14, 2016 | 39 | 2016 |
| Version VI of the ESTree db: an improved tool for peach transcriptome analysis B Lazzari, A Caprera, A Vecchietti, I Merelli, F Barale, L Milanesi, A Stella, ... BMC bioinformatics 9 (2), 1-6, 2008 | 39 | 2008 |
| Cloud infrastructures for in silico drug discovery: economic and practical aspects D D'Agostino, A Clematis, A Quarati, D Cesini, F Chiappori, L Milanesi, ... BioMed Research International 2013, 2013 | 35 | 2013 |
| Combining edge and cloud computing for low-power, cost-effective metagenomics analysis D D’Agostino, L Morganti, E Corni, D Cesini, I Merelli Future Generation Computer Systems 90, 79-85, 2019 | 34 | 2019 |
| NuChart: an R package to study gene spatial neighbourhoods with multi-omics annotations I Merelli, P Liň, L Milanesi PLoS One 8 (9), e75146, 2013 | 34 | 2013 |
| StreamFlow: cross-breeding cloud with HPC I Colonnelli, B Cantalupo, I Merelli, M Aldinucci IEEE Transactions on Emerging Topics in Computing, 2020 | 33 | 2020 |
| In silico saturation mutagenesis and docking screening for the analysis of protein-ligand interaction: the Endothelial Protein C Receptor case study F Chiappori, P D'Ursi, I Merelli, L Milanesi, E Rovida BMC bioinformatics 10 (12), 1-8, 2009 | 30 | 2009 |
| A data integration approach for cell cycle analysis oriented to model simulation in systems biology R Alfieri, I Merelli, E Mosca, L Milanesi BMC systems biology 1, 1-12, 2007 | 29 | 2007 |
| SNPranker 2.0: a gene-centric data mining tool for diseases associated SNP prioritization in GWAS I Merelli, A Calabria, P Cozzi, F Viti, E Mosca, L Milanesi BMC bioinformatics 14, 1-12, 2013 | 28 | 2013 |
| Structural thermal adaptation of β‐tubulins from the Antarctic psychrophilic protozoan Euplotes focardii F Chiappori, S Pucciarelli, I Merelli, P Ballarini, C Miceli, L Milanesi Proteins: Structure, Function, and Bioinformatics 80 (4), 1154-1166, 2012 | 28 | 2012 |
