| A comparison of automatic cell identification methods for single-cell RNA-sequencing data T Abdelaal, L Michielsen, D Cats, D Hoogduin, H Mei, M Reinders, ... Genome Biology 20 (1), 194, 2019 | 471 | 2019 |
| Memory CD4+ T cells are generated in the human fetal intestine N Li, V van Unen, T Abdelaal, N Guo, SA Kasatskaya, K Ladell, ... Nature immunology 20 (3), 301-312, 2019 | 129 | 2019 |
| High-dimensional cytometric analysis of colorectal cancer reveals novel mediators of antitumour immunity NL de Vries, V van Unen, ME Ijsselsteijn, T Abdelaal, R van der Breggen, ... Gut, gutjnl-2019-318672, 2019 | 115 | 2019 |
| SpaGE: Spatial Gene Enhancement using scRNA-seq T Abdelaal, S Mourragui, A Mahfouz, MJT Reinders Nucleic Acids Research 48 (18), e107, 2020 | 107 | 2020 |
| Predicting cell populations in single cell mass cytometry data T Abdelaal, V van Unen, T Höllt, F Koning, MJT Reinders, A Mahfouz Cytometry Part A 95 (7), 769-781, 2019 | 49 | 2019 |
| A third vaccination with a single T cell epitope confers protection in a murine model of SARS-CoV-2 infection IN Pardieck, TC van der Sluis, ETI van der Gracht, DMB Veerkamp, ... Nature communications 13 (1), 3966, 2022 | 32 | 2022 |
| CyTOFmerge: integrating mass cytometry data across multiple panels T Abdelaal, T Höllt, V van Unen, BPF Lelieveldt, F Koning, MJT Reinders, ... Bioinformatics 35 (20), 4063-4071, 2019 | 27 | 2019 |
| Early-life compartmentalization of immune cells in human fetal tissues revealed by high-dimensional mass cytometry N Li, V Van Unen, N Guo, T Abdelaal, A Somarakis, J Eggermont, ... Frontiers in Immunology 10, 1932, 2019 | 16 | 2019 |
| Identification of a disease-associated network of intestinal immune cells in treatment-naive inflammatory bowel disease V Unen, LF Ouboter, N Li, M Schreurs, T Abdelaal, Y Kooy-Winkelaar, ... Frontiers in Immunology, 2802, 2022 | 12 | 2022 |
| Reference-based cell type matching of in situ image-based spatial transcriptomics data on primary visual cortex of mouse brain Y Zhang, JA Miller, J Park, BP Lelieveldt, B Long, T Abdelaal, ... Scientific Reports 13 (1), 9567, 2023 | 9* | 2023 |
| Spatial transcriptomics reveal markers of histopathological changes in Duchenne muscular dystrophy mouse models LGM Heezen, T Abdelaal, M van Putten, A Aartsma-Rus, A Mahfouz, ... Nature Communications 14 (4909), 1-16, 2023 | 8 | 2023 |
| OX40 agonism enhances PD-L1 checkpoint blockade by shifting the cytotoxic T cell differentiation spectrum TC van der Sluis, G Beyrend, ETI van der Gracht, T Abdelaal, SP Jochems, ... Cell Reports Medicine 4 (3), 2023 | 8* | 2023 |
| scMoC: single-cell multi-omics clustering M Eltager, T Abdelaal, A Mahfouz, MJT Reinders Bioinformatics Advances 2 (1), vbac011, 2022 | 8 | 2022 |
| Local and systemic immune profiles of human pancreatic ductal adenocarcinoma revealed by single-cell mass cytometry TP Brouwer, NL de Vries, T Abdelaal, RT Krog, Z Li, D Ruano, A Fariña, ... Journal for ImmunoTherapy of Cancer 10 (7), 2022 | 7 | 2022 |
| Phenotypic characterization by mass cytometry of the microenvironment in ovarian cancer and impact of tumor dissociation methods S Anandan, LCV Thomsen, SE Gullaksen, T Abdelaal, K Kleinmanns, ... Cancers 13 (4), 755, 2021 | 7 | 2021 |
| Memory CD8+ T cell heterogeneity is primarily driven by pathogen-specific cues and additionally shaped by the tissue environment ETI van der Gracht, G Beyrend, T Abdelaal, IN Pardieck, TH Wesselink, ... Iscience 24 (1), 2021 | 7 | 2021 |
| SIRV: Spatial inference of RNA velocity at the single-cell resolution T Abdelaal, LM Grossouw, RJ Pasterkamp, BPF Lelieveldt, MJT Reinders, ... bioRxiv, 2021.07. 26.453774, 2021 | 6 | 2021 |
| SCHNEL: scalable clustering of high dimensional single-cell data T Abdelaal, P de Raadt, BPF Lelieveldt, MJT Reinders, A Mahfouz Bioinformatics 36 (Supplement_2), i849–i856, 2020 | 6 | 2020 |
| Benchmarking variational autoencoders on cancer transcriptomics data M Eltager, T Abdelaal, M Charrout, A Mahfouz, MJT Reinders, ... Plos one 18 (10), e0292126, 2023 | 3 | 2023 |
| scTopoGAN: unsupervised manifold alignment of single-cell data A Singh, K Biharie, MJT Reinders, A Mahfouz, T Abdelaal Bioinformatics Advances 3 (1), vbad171, 2023 | 2 | 2023 |
Ahmed MahfouzAssociate Professor, Leiden University Medical CenterVerified email at lumc.nl
