Pedro T. Monteiro
Pedro T. Monteiro
INESC-ID / IST - Universidade de Lisboa
Verified email at tecnico.ulisboa.pt - Homepage
Title
Cited by
Cited by
Year
The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae
MC Teixeira, P Monteiro, P Jain, S Tenreiro, AR Fernandes, NP Mira, ...
Nucleic acids research 34 (suppl 1), D446-D451, 2006
5772006
PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods
AP Francisco, C Vaz, PT Monteiro, J Melo-Cristino, M Ramirez, JA Carriço
BMC bioinformatics 13 (1), 1-10, 2012
3942012
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae
MC Teixeira, PT Monteiro, JF Guerreiro, JP Gonçalves, NP Mira, ...
Nucleic acids research 42 (D1), D161-D166, 2014
2592014
YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface
D Abdulrehman, PT Monteiro, MC Teixeira, NP Mira, AB Lourenço, ...
Nucleic acids research 39 (suppl 1), D136-D140, 2011
2192011
YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae
PT Monteiro, ND Mendes, MC Teixeira, S d’Orey, S Tenreiro, NP Mira, ...
Nucleic acids research 36 (suppl 1), D132-D136, 2008
1922008
Logical modeling and dynamical analysis of cellular networks
W Abou-Jaoudé, P Traynard, PT Monteiro, J Saez-Rodriguez, T Helikar, ...
Frontiers in genetics 7, 94, 2016
1412016
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools
C Chaouiya, D Bérenguier, SM Keating, A Naldi, MP Van Iersel, ...
BMC systems biology 7 (1), 135, 2013
1282013
YEASTRACT: an upgraded database for the analysis of transcription regulatory networks in Saccharomyces cerevisiae
MC Teixeira, PT Monteiro, M Palma, C Costa, CP Godinho, P Pais, ...
Nucleic acids research 46 (D1), D348-D353, 2018
1142018
Temporal logic patterns for querying dynamic models of cellular interaction networks
PT Monteiro, D Ropers, R Mateescu, AT Freitas, H De Jong
Bioinformatics 24 (16), i227-i233, 2008
1062008
Efficient parameter search for qualitative models of regulatory networks using symbolic model checking
G Batt, M Page, I Cantone, G Goessler, P Monteiro, H De Jong
Bioinformatics 26 (18), i603-i610, 2010
782010
Model checking to assess T-helper cell plasticity
W Abou-Jaoudé, PT Monteiro, A Naldi, M Grandclaudon, V Soumelis, ...
Frontiers in bioengineering and biotechnology 2, 86, 2015
752015
Dynamical modeling and analysis of large cellular regulatory networks
D Bérenguier, C Chaouiya, PT Monteiro, A Naldi, E Remy, D Thieffry, ...
Chaos: An Interdisciplinary Journal of Nonlinear Science 23 (2), 025114, 2013
672013
Cooperative development of logical modelling standards and tools with CoLoMoTo
A Naldi, PT Monteiro, C Müssel, HA Kestler, D Thieffry, I Xenarios, ...
Bioinformatics 31 (7), 1154-1159, 2015
562015
YEASTRACT+: a portal for cross-species comparative genomics of transcription regulation in yeasts
PT Monteiro, J Oliveira, P Pais, M Antunes, M Palma, M Cavalheiro, ...
Nucleic Acids Research 48 (D1), D642-D649, 2020
392020
Logical modeling and analysis of cellular regulatory networks with ginsim 3.0
A Naldi, C Hernandez, W Abou-Jaoudé, PT Monteiro, C Chaouiya, ...
Frontiers in physiology 9, 646, 2018
382018
The CoLoMoTo interactive notebook: accessible and reproducible computational analyses for qualitative biological networks
A Naldi, C Hernandez, N Levy, G Stoll, PT Monteiro, C Chaouiya, ...
Frontiers in physiology 9, 680, 2018
352018
Genetic Network Analyzer: A Tool for the Qualitative Modeling and Simulation of Bacterial Regulatory Networks
G Batt, B Besson, H de Jong, E Dumas, J Geiselmann, R Monte, ...
Bacterial Molecular Networks, 439-462, 2012
352012
The PathoYeastract database: an information system for the analysis of gene and genomic transcription regulation in pathogenic yeasts
PT Monteiro, P Pais, C Costa, S Manna, I Sá-Correia, MC Teixeira
Nucleic acids research 45 (D1), D597-D603, 2017
342017
Spanning edge betweenness
AS Teixeira, PT Monteiro, JA Carriço, M Ramirez, AP Francisco
Workshop on mining and learning with graphs 24, 27-31, 2013
262013
A service-oriented architecture for integrating the modeling and formal verification of genetic regulatory networks
PT Monteiro, E Dumas, B Besson, R Mateescu, M Page, AT Freitas, ...
BMC bioinformatics 10 (1), 1-12, 2009
242009
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Articles 1–20