Mark Chaisson
Mark Chaisson
Email verificata su usc.edu - Home page
Titolo
Citata da
Citata da
Anno
STAR: ultrafast universal RNA-seq aligner
A Dobin, CA Davis, F Schlesinger, J Drenkow, C Zaleski, S Jha, P Batut, ...
Bioinformatics 29 (1), 15-21, 2013
114912013
An integrated map of structural variation in 2,504 human genomes
PH Sudmant, T Rausch, EJ Gardner, RE Handsaker, A Abyzov, ...
Nature 526 (7571), 75-81, 2015
11522015
Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory
MJ Chaisson, G Tesler
BMC bioinformatics 13 (1), 238, 2012
7662012
Resolving the complexity of the human genome using single-molecule sequencing
MJP Chaisson, J Huddleston, MY Dennis, PH Sudmant, M Malig, ...
Nature 517 (7536), 608-611, 2015
5292015
Short read fragment assembly of bacterial genomes
MJ Chaisson, PA Pevzner
Genome research 18 (2), 324-330, 2008
5232008
De novo fragment assembly with short mate-paired reads: Does the read length matter?
MJ Chaisson, D Brinza, PA Pevzner
Genome research 19 (2), 336-346, 2009
3462009
Extensive sequencing of seven human genomes to characterize benchmark reference materials
JM Zook, D Catoe, J McDaniel, L Vang, N Spies, A Sidow, Z Weng, Y Liu, ...
Scientific data 3 (1), 1-26, 2016
2852016
Fragment assembly with short reads
M Chaisson, P Pevzner, H Tang
Bioinformatics 20 (13), 2067-2074, 2004
2612004
Long-read sequence assembly of the gorilla genome
D Gordon, J Huddleston, MJP Chaisson, CM Hill, ZN Kronenberg, ...
Science 352 (6281), aae0344, 2016
2352016
Genetic variation and the de novo assembly of human genomes
MJP Chaisson, RK Wilson, EE Eichler
Nature Reviews Genetics 16 (11), 627-640, 2015
2342015
Reconstructing complex regions of genomes using long-read sequencing technology
J Huddleston, S Ranade, M Malig, F Antonacci, M Chaisson, L Hon, ...
Genome research 24 (4), 688-696, 2014
2212014
Discovery and genotyping of structural variation from long-read haploid genome sequence data
J Huddleston, MJP Chaisson, KM Steinberg, W Warren, K Hoekzema, ...
Genome research 27 (5), 677-685, 2017
1782017
Multi-platform discovery of haplotype-resolved structural variation in human genomes
MJP Chaisson, AD Sanders, X Zhao, A Malhotra, D Porubsky, T Rausch, ...
Nature communications 10 (1), 1-16, 2019
1422019
High-resolution comparative analysis of great ape genomes
ZN Kronenberg, IT Fiddes, D Gordon, S Murali, S Cantsilieris, ...
Science 360 (6393), eaar6343, 2018
1072018
Assembly of long error-prone reads using de Bruijn graphs
Y Lin, J Yuan, M Kolmogorov, MW Shen, M Chaisson, PA Pevzner
Proceedings of the National Academy of Sciences 113 (52), E8396-E8405, 2016
782016
Paired de bruijn graphs: a novel approach for incorporating mate pair information into genome assemblers
P Medvedev, S Pham, M Chaisson, G Tesler, P Pevzner
Journal of Computational Biology 18 (11), 1625-1634, 2011
772011
Sequence assembly and consensus sequence determination
A Klammer, S Tang, M Chaisson, J Sorenson, C Chen-Shan
US Patent App. 13/034,233, 2011
742011
Sequence assembly and consensus sequence determination
M Chaisson
US Patent 9,165,109, 2015
442015
Microinversions in mammalian evolution
MJ Chaisson, BJ Raphael, PA Pevzner
Proceedings of the National Academy of Sciences 103 (52), 19824-19829, 2006
432006
Sequencing methods using enzyme conformation
M Chaisson, S Clark, C Silk, J Lyle, L Jia, K Bjornson
US Patent 8,911,972, 2014
342014
Il sistema al momento non pu eseguire l'operazione. Riprova pi tardi.
Articoli 1–20