| MrModeltest v2 JAA Nylander Program distributed by the author, 2004 | 8519* | 2004 |
| MrAIC. pl. Program distributed by the author JAA Nylander Evolutionary Biology Centre, Uppsala University, 2004 | 6696* | 2004 |
| Bayesian phylogenetic analysis of combined data JAA Nylander, F Ronquist, JP Huelsenbeck, J Nieves-Aldrey Systematic biology 53 (1), 47-67, 2004 | 1801 | 2004 |
| AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics JAA Nylander, JC Wilgenbusch, DL Warren, DL Swofford Bioinformatics 24 (4), 581-583, 2008 | 1393 | 2008 |
| Tracing the impact of the Andean uplift on Neotropical plant evolution A Antonelli, JAA Nylander, C Persson, I Sanmartín Proceedings of the National Academy of Sciences 106 (24), 9749-9754, 2009 | 551 | 2009 |
| Accounting for Phylogenetic Uncertainty in Biogeography: A Bayesian Approach to Dispersal-Vicariance Analysis of the Thrushes (Aves: Turdus) JAA Nylander, U Olsson, P Alström, I SANMARTin Systematic Biology 57 (2), 257-268, 2008 | 365 | 2008 |
| An evaluation of new parsimony‐based versus parametric inference methods in biogeography: a case study using the globally distributed plant family Sapindaceae S Buerki, F Forest, N Alvarez, JAA Nylander, N Arrigo, I Sanmartín Journal of Biogeography 38 (3), 531-550, 2011 | 179 | 2011 |
| Genome erosion in a nitrogen-fixing vertically transmitted endosymbiotic multicellular cyanobacterium L Ran, J Larsson, T Vigil-Stenman, JAA Nylander, K Ininbergs, WW Zheng, ... PLoS One 5 (7), e11486, 2010 | 178 | 2010 |
| Plastid and nuclear DNA markers reveal intricate relationships at subfamilial and tribal levels in the soapberry family (Sapindaceae) S Buerki, F Forest, P Acevedo-Rodríguez, MW Callmander, JAA Nylander, ... Molecular Phylogenetics and Evolution 51 (2), 238-258, 2009 | 157 | 2009 |
| Genome fluctuations in cyanobacteria reflect evolutionary, developmental and adaptive traits J Larsson, JAA Nylander, B Bergman BMC evolutionary biology 11 (1), 1-21, 2011 | 147 | 2011 |
| Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS sequences RH Nilsson, L Tedersoo, K Abarenkov, M Ryberg, E Kristiansson, ... MycoKeys 4, 37, 2012 | 146 | 2012 |
| Functional tradeoffs underpin salinity-driven divergence in microbial community composition CL Dupont, J Larsson, S Yooseph, K Ininbergs, J Goll, ... PloS one 9 (2), e89549, 2014 | 134 | 2014 |
| Phylogeny, evolution and classification of gall wasps: the plot thickens F Ronquist, JL Nieves-Aldrey, ML Buffington, Z Liu, J Liljeblad, ... PloS one 10 (5), e0123301, 2015 | 133 | 2015 |
| A maximum-likelihood analysis of eight phylogenetic markers in gallwasps (Hymenoptera: Cynipidae): implications for insect phylogenetic studies A Rokas, JAA Nylander, F Ronquist, GN Stone Molecular Phylogenetics and Evolution 22 (2), 206-219, 2002 | 123 | 2002 |
| The phylogeny and evolution of Figitidae (Hymenoptera: Cynipoidea) ML Buffington, JAA Nylander, JM Heraty Cladistics 23 (5), 403-431, 2007 | 107 | 2007 |
| Phylogenetic relationships of typical antbirds (Thamnophilidae) and test of incongruence based on Bayes factors M Irestedt, J Fjeldsĺ, JAA Nylander, PGP Ericson BMC Evolutionary Biology 4 (1), 1-16, 2004 | 96 | 2004 |
| Bayesian phylogenetics and the evolution of gall wasps JAA Nylander Acta Universitatis Upsaliensis, 2004 | 80 | 2004 |
| Evolutionary biology centre JAA Nylander Uppsala University, 2004 | 76 | 2004 |
| Dating the diversification of the major lineages of Passeriformes (Aves) PGP Ericson, S Klopfstein, M Irestedt, JMT Nguyen, JAA Nylander BMC Evolutionary Biology 14 (1), 1-15, 2014 | 66 | 2014 |
| Phylogenetic relationships and biogeography of the desert plant genus Fagonia (Zygophyllaceae), inferred by parsimony and Bayesian model averaging BA Beier, JAA Nylander, MW Chase, M Thulin Molecular phylogenetics and evolution 33 (1), 91-108, 2004 | 65 | 2004 |
Fredrik RonquistProfessor, Swedish Museum of Natural History, Dept. Bioinformatics and GeneticsVerified email at nrm.se
