Vangelis Simeonidis

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Hans WesterhoffUniversity of Amsterdam, VU University Amsterdam, University of ManchesterVerified email at manchester.ac.uk
Kieran SmallboneMCISB / Mathematics / Computer Science, University of ManchesterVerified email at manchester.ac.uk
Douglas KellUniversity of LiverpoolVerified email at liv.ac.uk
Nathan D. PriceProfessor, Buck Institute for Research on AgingVerified email at buckinstitute.org
Pedro MendesUniversity of ConnecticutVerified email at uchc.edu
Warwick DunnDepartment of Biochemistry and Systems Biology, ISMIB, University of LiverpoolVerified email at liverpool.ac.uk
Alexey KolodkinLuxembourg Centre for Systems Biomedicine (Luxembourg)Verified email at uni.lu
David BroomheadProfessor of Applied Mathematics, University of ManchesterVerified email at Manchester.ac.uk
Ettore MurabitoResearch Associate, University of ManchesterVerified email at manchester.ac.uk
Catherine L WinderDepartment of Biochemistry and Systems Biology, ISMIB, University of LiverpoolVerified email at Liverpool.ac.uk
Neil SwainstonEpoch BiodesignVerified email at epochbiodesign.com
Daniel JamesonUniversity of ManchesterVerified email at manchester.ac.uk
Norman W. PatonProfessor of Computer Science, University of ManchesterVerified email at manchester.ac.uk
S.G. OliverUniversity of CambridgeVerified email at cam.ac.uk
Lazaros PapageorgiouProfessor of Chemical EngineeringVerified email at ucl.ac.uk
Irena SpasicProfessor in Computer Science, Cardiff UniversityVerified email at cs.cardiff.ac.uk
Joseph Olufemi DadaProfessor of Electrical Engineering, Afe Babalola University, Ado-EkitiVerified email at abuad.edu.ng
Pinar PirDepartment of Bioengineering, Gebze Technical University, TurkeyVerified email at gtu.edu.tr
Dr. Olusegun oshotaPost-Doctoral Research Associate in Computational Biology, University of Cambridge, UKVerified email at cam.ac.uk
Natalie J StanfordConsultant, Hybrid IntelligenceVerified email at tessella.com

Vangelis Simeonidis

Senior Project Manager, PATH

Verified email at path.org - Homepage

vaccines project management regulatory affairs clinical operations systems biology


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A community-driven global reconstruction of human metabolism I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ... Nature biotechnology 31 (5), 419-425, 2013	1204	2013
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology MJ Herrgård, N Swainston, P Dobson, WB Dunn, KY Arga, M Arvas, ... Nature biotechnology 26 (10), 1155-1160, 2008	692	2008
Towards a genome-scale kinetic model of cellular metabolism K Smallbone, E Simeonidis, N Swainston, P Mendes BMC systems biology 4, 1-9, 2010	199	2010
A model of yeast glycolysis based on a consistent kinetic characterisation of all its enzymes K Smallbone, HL Messiha, KM Carroll, CL Winder, N Malys, WB Dunn, ... FEBS letters 587 (17), 2832-2841, 2013	160	2013
Further developments towards a genome-scale metabolic model of yeast PD Dobson, K Smallbone, D Jameson, E Simeonidis, K Lanthaler, P Pir, ... BMC systems biology 4, 1-7, 2010	144	2010
Something from nothing− bridging the gap between constraint‐based and kinetic modelling K Smallbone, E Simeonidis, DS Broomhead, DB Kell The FEBS journal 274 (21), 5576-5585, 2007	127	2007
Genome-scale modeling for metabolic engineering E Simeonidis, ND Price Journal of Industrial Microbiology and Biotechnology 42 (3), 327-338, 2015	120	2015
Systems biology: the elements and principles of life HV Westerhoff, C Winder, H Messiha, E Simeonidis, M Adamczyk, ... FEBS letters 583 (24), 3882-3890, 2009	107	2009
Flux balance analysis: a geometric perspective K Smallbone, E Simeonidis Journal of theoretical biology 258 (2), 311-315, 2009	99	2009
Macromolecular networks and intelligence in microorganisms HV Westerhoff, AN Brooks, E Simeonidis, R García-Contreras, F He, ... Frontiers in microbiology 5, 379, 2014	94	2014
Capturing the essence of a metabolic network: a flux balance analysis approach E Murabito, E Simeonidis, K Smallbone, J Swinton Journal of theoretical biology 260 (3), 445-452, 2009	56	2009
Robustness of the p53 network and biological hackers L Dartnell, E Simeonidis, M Hubank, S Tsoka, IDL Bogle, ... FEBS letters 579 (14), 3037-3042, 2005	56	2005
Combining inferred regulatory and reconstructed metabolic networks enhances phenotype prediction in yeast Z Wang, SA Danziger, BD Heavner, S Ma, JJ Smith, S Li, T Herricks, ... PLoS computational biology 13 (5), e1005489, 2017	53	2017
Systematic integration of experimental data and models in systems biology P Li, JO Dada, D Jameson, I Spasic, N Swainston, K Carroll, W Dunn, ... BMC bioinformatics 11, 1-11, 2010	49	2010
Why does yeast ferment? A flux balance analysis study E Simeonidis, E Murabito, K Smallbone, HV Westerhoff Biochemical Society Transactions 38 (5), 1225-1229, 2010	35	2010
MINLP models for the synthesis of optimal peptide tags and downstream protein processing E Simeonidis, JM Pinto, ME Lienqueo, S Tsoka, LG Papageorgiou Biotechnology progress 21 (3), 875-884, 2005	32	2005
Mechanistic modeling of aberrant energy metabolism in human disease V Sangar, JA Eddy, E Simeonidis, ND Price Frontiers in physiology 3, 404, 2012	29	2012
Analysis of metabolic networks using a pathway distance metric through linear programming E Simeonidis, SCG Rison, JM Thornton, IDL Bogle, LG Papageorgiou Metabolic engineering 5 (3), 211-219, 2003	27	2003
MediaDB: a database of microbial growth conditions in defined media MA Richards, V Cassen, BD Heavner, NE Ajami, A Herrmann, ... PLoS One 9 (8), e103548, 2014	26	2014
KiPar, a tool for systematic information retrieval regarding parameters for kinetic modelling of yeast metabolic pathways I Spasić, E Simeonidis, HL Messiha, NW Paton, DB Kell Bioinformatics 25 (11), 1404-1411, 2009	24	2009

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