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Yuri Pirola
Yuri Pirola
Associate professor at DISCo, Univ. of Milano-Bicocca
Verified email at unimib.it - Homepage
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Cited by
Year
Bioconda: sustainable and comprehensive software distribution for the life sciences
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475-476, 2018
8272018
Protein Kinase A Activation Promotes Cancer Cell Resistance to Glucose Starvation and Anoikis
R Palorini, G Votta, Y Pirola, H De Vitto, S De Palma, C Airoldi, M Vasso, ...
PLoS genetics 12 (3), e1005931, 2016
832016
HapCol: accurate and memory-efficient haplotype assembly from long reads
Y Pirola, S Zaccaria, R Dondi, GW Klau, N Pisanti, P Bonizzoni
Bioinformatics 32 (11), 1610-1617, 2016
562016
Overlap graphs and de Bruijn graphs: data structures for de novo genome assembly in the big data era
R Rizzi, S Beretta, M Patterson, Y Pirola, M Previtali, G Della Vedova, ...
Quantitative Biology 7, 278-292, 2019
402019
A comprehensive view of fitness landscapes with neutrality and fitness clouds
L Vanneschi, M Tomassini, P Collard, S Vérel, Y Pirola, G Mauri
European Conference on Genetic Programming, 241-250, 2007
402007
On the Minimum Error Correction Problem for Haplotype Assembly in Diploid and Polyploid Genomes
P Bonizzoni, R Dondi, GW Klau, Y Pirola, N Pisanti, S Zaccaria
Journal of Computational Biology, 2016
382016
Variants of constrained longest common subsequence
P Bonizzoni, G Della Vedova, R Dondi, Y Pirola
Information processing letters 110 (20), 877-881, 2010
382010
A quantitative study of neutrality in GP boolean landscapes
L Vanneschi, Y Pirola, P Collard
Proceedings of the 8th annual conference on Genetic and evolutionary …, 2006
332006
Computational graph pangenomics: a tutorial on data structures and their applications
JA Baaijens, P Bonizzoni, C Boucher, G Della Vedova, Y Pirola, R Rizzi, ...
Natural Computing 21 (1), 81-108, 2022
312022
Modeling Alternative Splicing Variants from RNA-Seq Data with Isoform Graphs
S Beretta, P Bonizzoni, G Della Vedova, Y Pirola, R Rizzi
Journal of Computational Biology 16 (1), 16-40, 2013
222013
Detecting alternative gene structures from spliced ESTs: a computational approach
P Bonizzoni, G Mauri, G Pesole, E Picardi, Y Pirola, R Rizzi
Journal of computational biology 16 (1), 43-66, 2009
222009
FSG: Fast String Graph Construction for De Novo Assembly
P Bonizzoni, GD Vedova, Y Pirola, M Previtali, R Rizzi
Journal of Computational Biology 24 (10), 953-968, 2017
202017
A study of the neutrality of Boolean function landscapes in genetic programming
L Vanneschi, Y Pirola, G Mauri, M Tomassini, P Collard, S Verel
Theoretical Computer Science 425, 34-57, 2012
202012
LSG: An External-Memory Tool to Compute String Graphs for Next-Generation Sequencing Data Assembly
P Bonizzoni, GD Vedova, Y Pirola, M Previtali, R Rizzi
Journal of Computational Biology 23 (3), 137-149, 2016
182016
Covering pairs in directed acyclic graphs
N Beerenwinkel, S Beretta, P Bonizzoni, R Dondi, Y Pirola
The Computer Journal 58 (7), 1673-1686, 2015
172015
Multithread Multistring Burrows–Wheeler Transform and Longest Common Prefix Array
P Bonizzoni, G Della Vedova, Y Pirola, M Previtali, R Rizzi
Journal of Computational Biology 26 (9), 948-961, 2019
152019
On the fixed parameter tractability and approximability of the minimum error correction problem
P Bonizzoni, R Dondi, GW Klau, Y Pirola, N Pisanti, S Zaccaria
Combinatorial Pattern Matching: 26th Annual Symposium, CPM 2015, Ischia …, 2015
152015
An External-Memory Algorithm for String Graph Construction
P Bonizzoni, G Della Vedova, Y Pirola, M Previtali, R Rizzi
Algorithmica 78 (2), 394-424, 2017
142017
Use of SNP genotypes to identify carriers of harmful recessive mutations in cattle populations
F Biscarini, H Schwarzenbacher, H Pausch, EL Nicolazzi, Y Pirola, ...
BMC Genomics 17 (1), 857, 2016
142016
Parameterized complexity of k-anonymity: hardness and tractability
P Bonizzoni, G Della Vedova, R Dondi, Y Pirola
Journal of combinatorial optimization 26, 19-43, 2013
132013
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