Yuri Pirola
Yuri Pirola
Assistant professor at DISCo, Univ. of Milano-Bicocca
Verified email at unimib.it - Homepage
TitleCited byYear
HapCol: accurate and memory-efficient haplotype assembly from long reads
Y Pirola, S Zaccaria, R Dondi, GW Klau, N Pisanti, P Bonizzoni
Bioinformatics 32 (11), 1610-1617, 2016
362016
Variants of constrained longest common subsequence
P Bonizzoni, G Della Vedova, R Dondi, Y Pirola
Information processing letters 110 (20), 877-881, 2010
342010
Protein kinase A activation promotes cancer cell resistance to glucose starvation and anoikis
R Palorini, G Votta, Y Pirola, H De Vitto, S De Palma, C Airoldi, M Vasso, ...
PLoS genetics 12 (3), 2016
332016
A comprehensive view of fitness landscapes with neutrality and fitness clouds
L Vanneschi, M Tomassini, P Collard, S Vérel, Y Pirola, G Mauri
European Conference on Genetic Programming, 241-250, 2007
292007
Detecting alternative gene structures from spliced ESTs: a computational approach
P Bonizzoni, G Mauri, G Pesole, E Picardi, Y Pirola, R Rizzi
Journal of computational biology 16 (1), 43-66, 2009
222009
On the Minimum Error Correction Problem for Haplotype Assembly in Diploid and Polyploid Genomes
P Bonizzoni, R Dondi, GW Klau, Y Pirola, N Pisanti, S Zaccaria
Journal of Computational Biology, 2016
192016
On the Minimum Error Correction Problem for Haplotype Assembly in Diploid and Polyploid Genomes
P Bonizzoni, R Dondi, GW Klau, Y Pirola, N Pisanti, S Zaccaria
Journal of Computational Biology, 2016
192016
A quantitative study of neutrality in GP boolean landscapes
L Vanneschi, Y Pirola, P Collard
Proceedings of the 8th annual conference on Genetic and evolutionary …, 2006
192006
Modeling Alternative Splicing Variants from RNA-Seq Data with Isoform Graphs
S Beretta, P Bonizzoni, G Della Vedova, Y Pirola, R Rizzi
Journal of Computational Biology 16 (1), 16-40, 2013
182013
LSG: An External-Memory Tool to Compute String Graphs for Next-Generation Sequencing Data Assembly
P Bonizzoni, GD Vedova, Y Pirola, M Previtali, R Rizzi
Journal of Computational Biology 23 (3), 137-149, 2016
162016
Covering pairs in directed acyclic graphs
N Beerenwinkel, S Beretta, P Bonizzoni, R Dondi, Y Pirola
The Computer Journal 58 (7), 1673-1686, 2015
132015
Parameterized complexity of k-anonymity: hardness and tractability
P Bonizzoni, G Della Vedova, R Dondi, Y Pirola
Journal of combinatorial optimization 26 (1), 19-43, 2013
122013
An efficient algorithm for haplotype inference on pedigrees with recombinations and mutations
Y Pirola, P Bonizzoni, T Jiang
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB) 9 …, 2012
122012
On the fixed parameter tractability and approximability of the minimum error correction problem
P Bonizzoni, R Dondi, GW Klau, Y Pirola, N Pisanti, S Zaccaria
Annual Symposium on Combinatorial Pattern Matching, 100-113, 2015
112015
FSG: Fast String Graph Construction for De Novo Assembly
P Bonizzoni, GD Vedova, Y Pirola, M Previtali, R Rizzi
Journal of Computational Biology 24 (10), 953-968, 2017
92017
Constructing String Graphs in External Memory
P Bonizzoni, G Della Vedova, Y Pirola, M Previtali, R Rizzi
arXiv preprint arXiv:1405.7520, 2014
92014
Haplotype-based prediction of gene alleles using pedigrees and SNP genotypes
Y Pirola, G Della Vedova, P Bonizzoni, A Stella, F Biscarini
Bioinformatics, Computational Biology and Biomedical Informatics …, 2013
92013
Maximum disjoint paths on edge-colored graphs: approximability and tractability
P Bonizzoni, R Dondi, Y Pirola
Algorithms 6 (1), 1-11, 2013
92013
PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text
Y Pirola, R Rizzi, E Picardi, G Pesole, G Della Vedova, P Bonizzoni
BMC Bioinformatics 13 (Suppl 5), S2, 2012
92012
Pure parsimony xor haplotyping
P Bonizzoni, G Della Vedova, R Dondi, Y Pirola, R Rizzi
Computational Biology and Bioinformatics, IEEE/ACM Transactions on 7 (4 …, 2010
92010
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