|The transcriptional network for mesenchymal transformation of brain tumours|
MS Carro, WK Lim, MJ Alvarez, RJ Bollo, X Zhao, EY Snyder, EP Sulman, ...
Nature 463 (7279), 318-325, 2009
|Targeted inhibition of galectin-1 gene expression in tumor cells results in heightened T cell-mediated rejection: a potential mechanism of tumor-immune privilege|
N Rubinstein, M Alvarez, NW Zwirner, MA Toscano, JM Ilarregui, A Bravo, ...
Cancer cell 5 (3), 241-251, 2004
|A human B-cell interactome identifies MYB and FOXM1 as master regulators of proliferation in germinal centers|
C Lefebvre, P Rajbhandari, MJ Alvarez, P Bandaru, WK Lim, M Sato, ...
Molecular systems biology 6 (1), 2010
|Genome-wide identification of post-translational modulators of transcription factor activity in human B cells|
K Wang, M Saito, BC Bisikirska, MJ Alvarez, WK Lim, P Rajbhandari, ...
Nature biotechnology 27 (9), 829-837, 2009
|Integrated biochemical and computational approach identifies BCL6 direct target genes controlling multiple pathways in normal germinal center B cells|
K Basso, M Saito, P Sumazin, AA Margolin, K Wang, WK Lim, Y Kitagawa, ...
Blood 115 (5), 975-984, 2010
|Functional characterization of somatic mutations in cancer using network-based inference of protein activity|
MJ Alvarez, Y Shen, FM Giorgi, A Lachmann, BB Ding, BH Ye, A Califano
Nature Genetics, 2016
|Cross-Species Regulatory Network Analysis Identifies a Synergistic Interaction between FOXM1 and CENPF that Drives Prostate Cancer Malignancy|
A Aytes, A Mitrofanova, C Lefebvre, MJ Alvarez, M Castillo-Martin, ...
Cancer cell 25 (5), 638-651, 2014
|A community computational challenge to predict the activity of pairs of compounds|
M Bansal, J Yang, C Karan, MP Menden, JC Costello, H Tang, G Xiao, ...
Nature Biotechnology, 2014
|Identification of Causal Genetic Drivers of Human Disease through Systems-Level Analysis of Regulatory Networks|
JC Chen, MJ Alvarez, F Talos, H Dhruv, GE Rieckhof, A Iyer, KL Diefes, ...
Cell 159 (2), 402-414, 2014
|Secreted protein acidic and rich in cysteine produced by human melanoma cells modulates polymorphonuclear leukocyte recruitment and antitumor cytotoxic capacity|
MJ Alvarez, F Prada, E Salvatierra, AI Bravo, VP Lutzky, C Carbone, ...
Cancer research 65 (12), 5123-5132, 2005
|PFT1, the MED25 subunit of the plant Mediator complex, promotes flowering through CONSTANS dependent and independent mechanisms in Arabidopsis|
S Iñigo, MJ Alvarez, B Strasser, A Califano, PD Cerdán
The Plant Journal 69 (4), 601-612, 2012
|The recurrent architecture of tumour initiation, progression and drug sensitivity|
A Califano, MJ Alvarez
Nature Reviews Cancer, 2016
|Improving breast cancer survival analysis through competition-based multidimensional modeling|
E Bilal, J Dutkowski, J Guinney, IS Jang, BA Logsdon, G Pandey, ...
PLoS computational biology 9 (5), e1003047, 2013
|A complementary role for ELF3 and TFL1 in the regulation of flowering time by ambient temperature|
B Strasser, MJ Alvarez, A Califano, PD Cerdán
The Plant Journal 58 (4), 629-640, 2009
|Identification of neurodegenerative factors using translatome-regulatory network analysis|
L Brichta, W Shin, V Jackson-Lewis, J Blesa, EL Yap, Z Walker, J Zhang, ...
Nature neuroscience 18 (9), 1325-1333, 2015
|Inhibition of the autocrine IL-6–JAK2–STAT3–calprotectin axis as targeted therapy for HR−/HER2+ breast cancers|
R Rodriguez-Barrueco, J Yu, LP Saucedo-Cuevas, M Olivan, ...
Genes & development 29 (15), 1631-1648, 2015
|SPARC endogenous level, rather than fibroblast-produced SPARC or stroma reorganization induced by SPARC, is responsible for melanoma cell growth|
F Prada, LG Benedetti, AI Bravo, MJ Alvarez, C Carbone, OL Podhajcer
Journal of Investigative Dermatology 127 (11), 2618-2628, 2007
|STK38 is a critical upstream regulator of MYC’s oncogenic activity in human B-cell lymphoma|
BC Bisikirska, SJ Adam, MJ Alvarez, P Rajbhandari, R Cox, C Lefebvre, ...
Oncogene 32 (45), 5283-5291, 2012
|Regulation of extra-embryonic endoderm stem cell differentiation by Nodal and Cripto signaling|
M Kruithof-de Julio, MJ Alvarez, A Galli, J Chu, SM Price, A Califano, ...
Development 138 (18), 3885-3895, 2011
|A precision oncology approach to the pharmacological targeting of mechanistic dependencies in neuroendocrine tumors|
MJ Alvarez, PS Subramaniam, LH Tang, A Grunn, M Aburi, G Rieckhof, ...
Nature genetics, 1, 2018