| DnaK functions as a central hub in the E. coli chaperone network G Calloni, T Chen, SM Schermann, H Chang, P Genevaux, F Agostini, ... Cell reports 1 (3), 251-264, 2012 | 437 | 2012 |
| Predicting protein associations with long noncoding RNAs M Bellucci, F Agostini, M Masin, GG Tartaglia Nature methods 8 (6), 444-445, 2011 | 387 | 2011 |
| catRAPID omics: a web server for large-scale prediction of protein–RNA interactions F Agostini, A Zanzoni, P Klus, D Marchese, D Cirillo, GG Tartaglia Bioinformatics 29 (22), 2928-2930, 2013 | 273 | 2013 |
| Heteromeric RNP assembly at LINEs controls lineage-specific RNA processing J Attig, F Agostini, C Gooding, AM Chakrabarti, A Singh, N Haberman, ... Cell 174 (5), 1067-1081. e17, 2018 | 144 | 2018 |
| RADICL-seq identifies general and cell type–specific principles of genome-wide RNA-chromatin interactions A Bonetti, F Agostini, AM Suzuki, K Hashimoto, G Pascarella, J Gimenez, ... Nature Communications 11 (1), 1018, 2020 | 131 | 2020 |
| Sequence-based prediction of protein solubility F Agostini, M Vendruscolo, GG Tartaglia Journal of molecular biology 421 (2-3), 237-241, 2012 | 126 | 2012 |
| Neurodegenerative diseases: quantitative predictions of protein–RNA interactions D Cirillo, F Agostini, P Klus, D Marchese, S Rodriguez, B Bolognesi, ... Rna 19 (2), 129-140, 2013 | 82 | 2013 |
| cc SOL omics : a webserver for solubility prediction of endogenous and heterologous expression in Escherichia coli F Agostini, D Cirillo, CM Livi, R Delli Ponti, GG Tartaglia Bioinformatics 30 (20), 2975-2977, 2014 | 81 | 2014 |
| GPSeq reveals the radial organization of chromatin in the cell nucleus G Girelli, J Custodio, T Kallas, F Agostini, E Wernersson, B Spanjaard, ... Nature biotechnology 38 (10), 1184-1193, 2020 | 80 | 2020 |
| Disulfide bonds reduce the toxicity of the amyloid fibrils formed by an extracellular protein MF Mossuto, B Bolognesi, B Guixer, A Dhulesia, F Agostini, JR Kumita, ... Angewandte Chemie 123 (31), 7186-7189, 2011 | 70 | 2011 |
| iFISH is a publically available resource enabling versatile DNA FISH to study genome architecture E Gelali, G Girelli, M Matsumoto, E Wernersson, J Custodio, A Mota, ... Nature communications 10 (1), 1636, 2019 | 64 | 2019 |
| The cleverSuite approach for protein characterization: predictions of structural properties, solubility, chaperone requirements and RNA-binding abilities P Klus, B Bolognesi, F Agostini, D Marchese, A Zanzoni, GG Tartaglia Bioinformatics 30 (11), 1601-1608, 2014 | 64 | 2014 |
| Principles of self-organization in biological pathways: a hypothesis on the autogenous association of alpha-synuclein A Zanzoni, D Marchese, F Agostini, B Bolognesi, D Cirillo, M Botta-Orfila, ... Nucleic acids research 41 (22), 9987-9998, 2013 | 61 | 2013 |
| Somatic copy number alterations in human cancers: an analysis of publicly available data from the cancer genome atlas L Harbers, F Agostini, M Nicos, D Poddighe, M Bienko, N Crosetto Frontiers in oncology 11, 700568, 2021 | 56 | 2021 |
| X-inactivation: quantitative predictions of protein interactions in the Xist network F Agostini, D Cirillo, B Bolognesi, GG Tartaglia Nucleic acids research 41 (1), e31-e31, 2013 | 56 | 2013 |
| Recombination of repeat elements generates somatic complexity in human genomes G Pascarella, CC Hon, K Hashimoto, A Busch, J Luginbühl, C Parr, ... Cell 185 (16), 3025-3040. e6, 2022 | 51 | 2022 |
| Constitutive patterns of gene expression regulated by RNA-binding proteins D Cirillo, D Marchese, F Agostini, CM Livi, T Botta-Orfila, GG Tartaglia Genome biology 15, 1-13, 2014 | 44 | 2014 |
| Molecular landscape of the interaction between the urease accessory proteins UreE and UreG A Merloni, O Dobrovolska, B Zambelli, F Agostini, M Bazzani, F Musiani, ... Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1844 (9), 1662-1674, 2014 | 42 | 2014 |
| Genome-wide detection of DNA double-strand breaks by in-suspension BLISS BAM Bouwman, F Agostini, S Garnerone, G Petrosino, HJ Gothe, ... Nature protocols 15 (12), 3894-3941, 2020 | 35 | 2020 |
| SeAMotE: a method for high-throughput motif discovery in nucleic acid sequences F Agostini, D Cirillo, RD Ponti, GG Tartaglia BMC genomics 15, 1-9, 2014 | 34 | 2014 |
