Adjustment of dendritic cells to the breast-cancer microenvironment is subset specific P Michea, F Noël, E Zakine, U Czerwinska, P Sirven, O Abouzid, ... Nature immunology 19 (8), 885-897, 2018 | 205 | 2018 |
Independent component analysis for unraveling the complexity of cancer omics datasets N Sompairac, PV Nazarov, U Czerwinska, L Cantini, A Biton, A Molkenov, ... International Journal of molecular sciences 20 (18), 4414, 2019 | 108 | 2019 |
Determining the optimal number of independent components for reproducible transcriptomic data analysis U Kairov, L Cantini, A Greco, A Molkenov, U Czerwinska, E Barillot, ... BMC genomics 18, 1-13, 2017 | 73 | 2017 |
Reproducibility of Fluorescent Expression from Engineered Biological Constructs in E. coli J Beal, T Haddock-Angelli, M Gershater, K De Mora, M Lizarazo, ... PloS one 11 (3), e0150182, 2016 | 61 | 2016 |
A multiscale signalling network map of innate immune response in cancer reveals cell heterogeneity signatures M Kondratova, U Czerwinska, N Sompairac, SD Amigorena, V Soumelis, ... Nature communications 10 (1), 4808, 2019 | 48 | 2019 |
Deconvolution of transcriptomes and miRNomes by independent component analysis provides insights into biological processes and clinical outcomes of melanoma patients PV Nazarov, AK Wienecke-Baldacchino, A Zinovyev, U Czerwińska, ... BMC medical genomics 12, 1-17, 2019 | 42 | 2019 |
A blood RNA signature detecting severe disease in young dengue patients at hospital arrival I Nikolayeva, P Bost, I Casademont, V Duong, F Koeth, M Prot, ... The Journal of infectious diseases 217 (11), 1690-1698, 2018 | 34 | 2018 |
Reconstruction and signal propagation analysis of the Syk signaling network in breast cancer cells A Naldi, RM Larive, U Czerwinska, S Urbach, P Montcourrier, C Roy, ... PLoS Computational Biology 13 (3), e1005432, 2017 | 21 | 2017 |
DeDaL: Cytoscape 3 app for producing and morphing data-driven and structure-driven network layouts U Czerwinska, L Calzone, E Barillot, A Zinovyev BMC systems biology 9, 1-11, 2015 | 18 | 2015 |
The inconvenience of data of convenience: computational research beyond post-mortem analyses CA Azencott, T Aittokallio, S Roy, T Norman, S Friend, G Stolovitzky, ... Nature methods 14 (10), 937-938, 2017 | 13 | 2017 |
Interpretability of Machine Learning Models: How Can One Explain Machine Learning Models? U Czerwinska Applied Data Science in Tourism: Interdisciplinary Approaches, Methodologies …, 2022 | 7 | 2022 |
Complex Labelling and Similarity Prediction in Legal Texts: Automatic Analysis of France’s Court of Cassation Rulings T Charmet, I Cherichi, M Allain, U Czerwinska, A Fouret, B Sagot, ... Proceedings of the Thirteenth Language Resources and Evaluation Conference …, 2022 | 6 | 2022 |
Application of independent component analysis to tumor transcriptomes reveals specific and reproducible immune-related signals U Czerwinska, L Cantini, U Kairov, E Barillot, A Zinovyev International Conference on Latent Variable Analysis and Signal Separation …, 2018 | 4 | 2018 |
Unsupervised deconvolution of bulk omics profiles: Methodology and application to characterize the immune landscape in tumors U Czerwińska Sorbonne Paris Cité, 2018 | 4 | 2018 |
Collective intelligence defines biological functions in Wikipedia as communities in the hidden protein connection network A Zinovyev, U Czerwinska, L Cantini, E Barillot, KM Frahm, ... PLOS Computational Biology 16 (2), e1007652, 2020 | 3 | 2020 |
Independent component analysis provides clinically relevant insights into the biology of melanoma patients PV Nazarov, AK Wienecke-Baldacchino, A Zinovyev, U Czerwińska, ... BioRxiv, 395145, 2018 | 3 | 2018 |
Signalling network map of innate immune response in cancer reveals signatures of cell heterogeneity and polarization in tumor microenvironment I Kuperstein, M Kondratova, U Czerwinska, A Zinovyev, E Barillot HUMAN GENOMICS 12, 2018 | | 2018 |
NAR Awards 2016 SNIP Session, J Jagodnik, U Czerwinska, J Mugridge, R Lahr, ... Nucleic Acids Research 44 (22), 10527-10529, 2016 | | 2016 |
A Small Step into Galaxy, a Faster Pace for Metabolomics P Péricard, G Le Corguille, U CZERWINSKA, M Landi, F Giacomoni, ... Assessing the enrichment significance of a possition weight matrix (PWM …, 2013 | | 2013 |