Giulio Pavesi
Giulio Pavesi
Associate Professor of Computer Science (Bioinformatics), University of Milano, Italy
Email verificata su - Home page
Citata da
Citata da
The transcriptional landscape of the mammalian genome
P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ...
science 309 (5740), 1559-1563, 2005
Assessing computational tools for the discovery of transcription factor binding sites
M Tompa, N Li, TL Bailey, GM Church, B De Moor, E Eskin, AV Favorov, ...
Nature biotechnology 23 (1), 137-144, 2005
Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes
G Pavesi, P Mereghetti, G Mauri, G Pesole
Nucleic acids research 32 (suppl_2), W199-W203, 2004
An algorithm for finding signals of unknown length in DNA sequences
G Pavesi, G Mauri, G Pesole
Bioinformatics 17 (suppl_1), S207-S214, 2001
Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes
F Zambelli, G Pesole, G Pavesi
Nucleic acids research 37 (suppl_2), W247-W252, 2009
UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs
G Grillo, A Turi, F Licciulli, F Mignone, S Liuni, S Banfi, VA Gennarino, ...
Nucleic acids research 38 (suppl_1), D75-D80, 2010
Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing
DS Horner, G Pavesi, T Castrignano, PDO De Meo, S Liuni, M Sammeth, ...
Briefings in bioinformatics 11 (2), 181-197, 2010
Motif discovery and transcription factor binding sites before and after the next-generation sequencing era
F Zambelli, G Pesole, G Pavesi
Briefings in bioinformatics 14 (2), 225-237, 2013
The histone-like NF-Y is a bifunctional transcription factor
M Ceribelli, D Dolfini, D Merico, R Gatta, AM Vigano, G Pavesi, ...
Molecular and cellular biology 28 (6), 2047-2058, 2008
In silico representation and discovery of transcription factor binding sites
G Pavesi, G Mauri, G Pesole
Briefings in bioinformatics 5 (3), 217-236, 2004
A perspective of promoter architecture from the CCAAT box
D Dolfini, F Zambelli, G Pavesi, R Mantovani
Cell cycle 8 (24), 4127-4137, 2009
Identification of pathways directly regulated by SHORT VEGETATIVE PHASE during vegetative and reproductive development in Arabidopsis
V Gregis, F Andrés, A Sessa, RF Guerra, S Simonini, JL Mateos, S Torti, ...
Genome biology 14 (6), R56, 2013
NF-Y coassociates with FOS at promoters, enhancers, repetitive elements, and inactive chromatin regions, and is stereo-positioned with growth-controlling transcription factors
JD Fleming, G Pavesi, P Benatti, C Imbriano, R Mantovani, K Struhl
Genome research 23 (8), 1195-1209, 2013
MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes
G Pavesi, P Mereghetti, F Zambelli, M Stefani, G Mauri, G Pesole
Nucleic acids research 34 (suppl_2), W566-W570, 2006
SpliceAid-F: a database of human splicing factors and their RNA-binding sites
M Giulietti, F Piva, M D’Antonio, P D’Onorio De Meo, D Paoletti, ...
Nucleic acids research 41 (D1), D125-D131, 2013
Tissue-specific mtDNA abundance from exome data and its correlation with mitochondrial transcription, mass and respiratory activity
AM D'Erchia, A Atlante, G Gadaleta, G Pavesi, M Chiara, C De Virgilio, ...
Mitochondrion 20, 13-21, 2014
RNAProfile: an algorithm for finding conserved secondary structure motifs in unaligned RNA sequences
G Pavesi, G Mauri, M Stefani, G Pesole
Nucleic acids research 32 (10), 3258-3269, 2004
PscanChIP: finding over-represented transcription factor-binding site motifs and their correlations in sequences from ChIP-Seq experiments
F Zambelli, G Pesole, G Pavesi
Nucleic acids research 41 (W1), W535-W543, 2013
Gene trap lines identify Arabidopsis genes expressed in stomatal guard cells
M Galbiati, L Simoni, G Pavesi, E Cominelli, P Francia, A Vavasseur, ...
The Plant Journal 53 (5), 750-762, 2008
WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences
G Pavesi, F Zambelli, G Pesole
BMC bioinformatics 8 (1), 46, 2007
Il sistema al momento non può eseguire l'operazione. Riprova più tardi.
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