Simone Zaccaria
Title
Cited by
Cited by
Year
HapCol: accurate and memory-efficient haplotype assembly from long reads
Y Pirola, S Zaccaria, R Dondi, GW Klau, N Pisanti, P Bonizzoni
Bioinformatics 32 (11), 1610-1617, 2016
362016
On the minimum error correction problem for haplotype assembly in diploid and polyploid genomes
P Bonizzoni, R Dondi, GW Klau, Y Pirola, N Pisanti, S Zaccaria
Journal of Computational Biology 23 (9), 718-736, 2016
192016
Copy-number evolution problems: complexity and algorithms
M El-Kebir, BJ Raphael, R Shamir, R Sharan, S Zaccaria, M Zehavi, ...
International Workshop on Algorithms in Bioinformatics, 137-149, 2016
142016
The copy-number tree mixture deconvolution problem and applications to multi-sample bulk sequencing tumor data
S Zaccaria, M El-Kebir, GW Klau, BJ Raphael
International Conference on Research in Computational Molecular Biology, 318-335, 2017
132017
On the fixed parameter tractability and approximability of the minimum error correction problem
P Bonizzoni, R Dondi, GW Klau, Y Pirola, N Pisanti, S Zaccaria
Annual Symposium on Combinatorial Pattern Matching, 100-113, 2015
112015
Phylogenetic copy-number factorization of multiple tumor samples
S Zaccaria, M El-Kebir, GW Klau, BJ Raphael
Journal of Computational Biology 25 (7), 689-708, 2018
102018
Complexity and algorithms for copy-number evolution problems
M El-Kebir, BJ Raphael, R Shamir, R Sharan, S Zaccaria, M Zehavi, ...
Algorithms for Molecular Biology 12 (1), 13, 2017
102017
On the inversion-indel distance
E Willing, S Zaccaria, MDV Braga, J Stoye
BMC bioinformatics 14 (S15), S3, 2013
102013
HapCHAT: Adaptive haplotype assembly for efficiently leveraging high coverage in long reads
S Beretta, MD Patterson, S Zaccaria, G Della Vedova, P Bonizzoni
BMC bioinformatics 19 (1), 252, 2018
52018
Accurate quantification of copy-number aberrations and whole-genome duplications in multi-sample tumor sequencing data
S Zaccaria, BJ Raphael
bioRxiv, 496174, 2018
32018
HAPCOL: Accurate and Memory-efficient Haplotype Assembly from Long Reads
P Bonizzoni, R Dondi, GW Klau, Y Pirola, N Pisanti, S Zaccaria
High Throughput Sequencing SIG of ISMB/ECCB (HitSeq), 1-1, 2015
12015
Single-cell tumor phylogeny inference with copy-number constrained mutation losses
G Satas, S Zaccaria, G Mon, BJ Raphael
bioRxiv, 840355, 2019
2019
Characterizing the allele-and haplotype-specific copy number landscape of cancer genomes at single-cell resolution with CHISEL
S Zaccaria, BJ Raphael
bioRxiv, 837195, 2019
2019
Algorithmic Advances and Applications from RECOMB 2017
P Dao, YA Kim, D Wojtowicz, TM Przytycka, S Madan, R Sharan, ...
CELL SYSTEMS 5 (3), 176-186, 2017
2017
Inferring Genomic Variants and their Evolution: Combinatorial Optimization for Haplotype Assembly and Quantification of Intra-Tumor Heterogeneity
S Zaccaria
Università degli Studi di Milano-Bicocca, 2017
2017
BENJAMIN J. RAPHAEL
P Pevzner, S Zaccaria
Bioinformatics 32 (11), 1601-9, 2015
2015
Paola Bonizzoni1, Riccardo Dondi2, Gunnar W. Klau3, 5, Yuri Pirola1
N Pisanti, S Zaccaria
On the inversion-indel distance
E Willing12, S Zaccaria, MDV Braga, J Stoye
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Articles 1–18