Segui
Xing-Xing Shen (沈星星)
Xing-Xing Shen (沈星星)
Institute of Insect Sciences at Zhejiang Univeristy
Email verificata su zju.edu.cn - Home page
Titolo
Citata da
Citata da
Anno
Tempo and mode of genome evolution in the budding yeast subphylum
XX Shen, DA Opulente, J Kominek, X Zhou, JL Steenwyk, KV Buh, ...
Cell 175 (6), 1533-1545. e20, 2018
4292018
Contentious relationships in phylogenomic studies can be driven by a handful of genes
XX Shen, CT Hittinger, A Rokas
Nature Ecology & Evolution 1 (5), 0126, 2017
4122017
ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference
JL Steenwyk, TJ Buida III, Y Li, XX Shen, A Rokas
PLoS biology 18 (12), e3001007, 2020
2302020
Reconstructing the backbone of the Saccharomycotina yeast phylogeny using genome-scale data
XX Shen, X Zhou, J Kominek, CP Kurtzman, CT Hittinger, A Rokas
G3: Genes| Genomes| Genetics 6 (12), 3927-3939, 2016
2082016
Evaluating fast maximum likelihood-based phylogenetic programs using empirical phylogenomic data sets
X Zhou, XX Shen, CT Hittinger, A Rokas
Molecular Biology and Evolution 35 (2), 486–503, 2018
1902018
A genome-scale phylogeny of the kingdom Fungi
Y Li, JL Steenwyk, Y Chang, Y Wang, TY James, JE Stajich, JW Spatafora, ...
Current Biology 31 (8), 1653-1665. e5, 2021
1892021
Genome-scale phylogeny and contrasting modes of genome evolution in the fungal phylum Ascomycota
XX Shen, JL Steenwyk, AL LaBella, DA Opulente, X Zhou, J Kominek, Y Li, ...
Science Advances 6 (45), eabd0079, 2020
1092020
Rooting the animal tree of life
Y Li, XX Shen, B Evans, CW Dunn, A Rokas
Molecular Biology and Evolution, msab170, 2021
1082021
A robust phylogenomic timetree for biotechnologically and medically important fungi in the genera Aspergillus and Penicillium
JL Steenwyk, XX Shen, AL Lind, GG Goldman, A Rokas
mBio 10 (4), e00925-19, 2019
106*2019
Multiple genome alignments facilitate development of NPCL markers: a case study of tetrapod phylogeny focusing on the position of turtles
XX Shen, D Liang, JZ Wen, P Zhang
Molecular Biology and Evolution 28 (12), 3237-3252, 2011
1002011
Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts
JL Steenwyk, DA Opulente, J Kominek, XX Shen, X Zhou, AL Labella, ...
PLoS biology 17 (5), e3000255, 2019
992019
A versatile and highly efficient toolkit including 102 nuclear markers for vertebrate phylogenomics, tested by resolving the higher level relationships of the Caudata
XX Shen, D Liang, YJ Feng, MY Chen, P Zhang
Molecular Biology and Evolution 30 (10), 2235-2248, 2013
972013
Prickly waterlily and rigid hornwort genomes shed light on early angiosperm evolution
Y Yang, P Sun, L Lv, D Wang, D Ru, Y Li, T Ma, L Zhang, X Shen, F Meng, ...
Nature plants 6 (3), 215-222, 2020
962020
Functional and evolutionary characterization of a secondary metabolite gene cluster in budding yeasts
DJ Krause, J Kominek, DA Opulente, XX Shen, X Zhou, QK Langdon, ...
Proceedings of the National Academy of Sciences 115 (43), 11030-11035, 2018
832018
Eukaryotic acquisition of a bacterial operon
J Kominek, DT Doering, DA Opulente, XX Shen, X Zhou, J DeVirgilio, ...
Cell 176 (6), 1356-1366. e10, 2019
822019
Enlarged Multilocus Data set Provides Surprisingly Younger Time of Origin for the Plethodontidae, the Largest Family of Salamanders
XX Shen, D Liang, MY Chen, RL Mao, DB Wake, P Zhang
Systematic biology 65 (1), 66-81, 2016
772016
PhyKIT: a broadly applicable UNIX shell toolkit for processing and analyzing phylogenomic data
JL Steenwyk, TJ Buida III, AL Labella, Y Li, XX Shen, A Rokas
Bioinformatics 37 (16), 2325-2331, 2021
752021
Evolutionary instability of CUG-Leu in the genetic code of budding yeasts
T Krassowski, AY Coughlan, XX Shen, X Zhou, J Kominek, DA Opulente, ...
Nature communications 9 (1), 1887, 2018
722018
A genome-scale investigation of how sequence-, function-, and tree-based gene properties influence phylogenetic inference
XX Shen, L Salichos, A Rokas
Genome Biology and Evolution 8 (8), 2565-2580, 2016
702016
Evidence for loss and reacquisition of alcoholic fermentation in a fructophilic yeast lineage
C Gonçalves, JH Wisecaver, J Kominek, MS Oom, MJ Leandro, XX Shen, ...
Elife 7, e33034, 2018
672018
Il sistema al momento non può eseguire l'operazione. Riprova più tardi.
Articoli 1–20