| The genome of the domesticated apple (Malus × domestica Borkh.) R Velasco, A Zharkikh, J Affourtit, A Dhingra, A Cestaro, A Kalyanaraman, ... Nature genetics 42 (10), 833-839, 2010 | 2212 | 2010 |
| A high quality draft consensus sequence of the genome of a heterozygous grapevine variety R Velasco, A Zharkikh, M Troggio, DA Cartwright, A Cestaro, D Pruss, ... PloS one 2 (12), e1326, 2007 | 1249 | 2007 |
| A large-scale evaluation of computational protein function prediction P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ... Nature methods 10 (3), 221-227, 2013 | 917 | 2013 |
| Genome-wide transcriptional analysis of grapevine berry ripening reveals a set of genes similarly modulated during three seasons and the occurrence of an oxidative burst at … S Pilati, M Perazzolli, A Malossini, A Cestaro, L Demattè, P Fontana, ... BMC genomics 8, 1-22, 2007 | 281 | 2007 |
| The draft genome sequence of European pear (Pyrus communis L.‘Bartlett’) D Chagné, RN Crowhurst, M Pindo, A Thrimawithana, C Deng, H Ireland, ... PloS one 9 (4), e92644, 2014 | 261 | 2014 |
| Ripening and genotype control stilbene accumulation in healthy grapes P Gatto, U Vrhovsek, J Muth, C Segala, C Romualdi, P Fontana, D Pruefer, ... Journal of agricultural and food chemistry 56 (24), 11773-11785, 2008 | 231 | 2008 |
| MICCA: a complete and accurate software for taxonomic profiling of metagenomic data D Albanese, P Fontana, C De Filippo, D Cavalieri, C Donati Scientific reports 5 (1), 9743, 2015 | 222 | 2015 |
| Linking Genomics and Ecology to Investigate the Complex Evolution of an Invasive Drosophila Pest L Ometto, A Cestaro, S Ramasamy, A Grassi, S Revadi, S Siozios, ... Genome biology and evolution 5 (4), 745-757, 2013 | 151 | 2013 |
| Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms M Falda, S Toppo, A Pescarolo, E Lavezzo, B Di Camillo, A Facchinetti, ... BMC bioinformatics 13 (4), 1-9, 2012 | 146 | 2012 |
| Downy mildew resistance induced by Trichoderma harzianum T39 in susceptible grapevines partially mimics transcriptional changes of resistant genotypes M Perazzolli, M Moretto, P Fontana, A Ferrarini, R Velasco, C Moser, ... BMC genomics 13, 1-19, 2012 | 140 | 2012 |
| Bioinformatic approaches for functional annotation and pathway inference in metagenomics data C De Filippo, M Ramazzotti, P Fontana, D Cavalieri Briefings in bioinformatics 13 (6), 696-710, 2012 | 95 | 2012 |
| Characterization of resistance gene analogues (RGAs) in apple (Malus× domestica Borkh.) and their evolutionary history of the Rosaceae family M Perazzolli, G Malacarne, A Baldo, L Righetti, A Bailey, P Fontana, ... PloS one 9 (2), e83844, 2014 | 67 | 2014 |
| Transcriptome analysis of Medicago truncatula leaf senescence: similarities and differences in metabolic and transcriptional regulations as compared with Arabidopsis, nodule … R De Michele, E Formentin, M Todesco, S Toppo, F Carimi, M Zottini, ... New Phytologist 181 (3), 563-575, 2009 | 65 | 2009 |
| Comparative analysis of expressed sequence tags from different organs of Vitis vinifera L. C Moser, C Segala, P Fontana, I Salakhudtinov, P Gatto, M Pindo, ... Functional & integrative genomics 5, 208-217, 2005 | 62 | 2005 |
| Sequencing and assembly of highly heterozygous genome of Vitis vinifera L. cv Pinot Noir: problems and solutions A Zharkikh, M Troggio, D Pruss, A Cestaro, G Eldrdge, M Pindo, ... Journal of biotechnology 136 (1-2), 38-43, 2008 | 54 | 2008 |
| The SSEA server for protein secondary structure alignment P Fontana, E Bindewald, S Toppo, R Velasco, G Valle, SCE Tosatto Bioinformatics 21 (3), 393-395, 2005 | 54 | 2005 |
| Reducing bias in RNA sequencing data: a novel approach to compute counts F Finotello, E Lavezzo, L Bianco, L Barzon, P Mazzon, P Fontana, ... BMC bioinformatics 15 (1), 1-12, 2014 | 50 | 2014 |
| Rapid annotation of anonymous sequences from genome projects using semantic similarities and a weighting scheme in gene ontology P Fontana, A Cestaro, R Velasco, E Formentin, S Toppo PLoS One 4 (2), e4619, 2009 | 47 | 2009 |
| Enhancing protein function prediction with taxonomic constraints–The Argot2. 5 web server E Lavezzo, M Falda, P Fontana, L Bianco, S Toppo Methods 93, 15-23, 2016 | 42 | 2016 |
| Deconstruction of the (paleo) polyploid grapevine genome based on the analysis of transposition events involving NBS resistance genes G Malacarne, M Perazzolli, A Cestaro, L Sterck, P Fontana, Y Van de Peer, ... PloS one 7 (1), e29762, 2012 | 37 | 2012 |
Stefano ToppoDepartment of Molecular MedicineVerified email at unipd.it
