Paolo Fontana
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The genome of the domesticated apple (Malus × domestica Borkh.)
R Velasco, A Zharkikh, J Affourtit, A Dhingra, A Cestaro, A Kalyanaraman, ...
Nature genetics 42 (10), 833-839, 2010
A high quality draft consensus sequence of the genome of a heterozygous grapevine variety
R Velasco, A Zharkikh, M Troggio, DA Cartwright, A Cestaro, D Pruss, ...
PloS one 2 (12), e1326, 2007
A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221-227, 2013
Genome-wide transcriptional analysis of grapevine berry ripening reveals a set of genes similarly modulated during three seasons and the occurrence of an oxidative burst at …
S Pilati, M Perazzolli, A Malossini, A Cestaro, L Demattè, P Fontana, ...
BMC genomics 8, 1-22, 2007
The draft genome sequence of European pear (Pyrus communis L.‘Bartlett’)
D Chagné, RN Crowhurst, M Pindo, A Thrimawithana, C Deng, H Ireland, ...
PloS one 9 (4), e92644, 2014
Ripening and genotype control stilbene accumulation in healthy grapes
P Gatto, U Vrhovsek, J Muth, C Segala, C Romualdi, P Fontana, D Pruefer, ...
Journal of agricultural and food chemistry 56 (24), 11773-11785, 2008
MICCA: a complete and accurate software for taxonomic profiling of metagenomic data
D Albanese, P Fontana, C De Filippo, D Cavalieri, C Donati
Scientific reports 5 (1), 9743, 2015
Linking Genomics and Ecology to Investigate the Complex Evolution of an Invasive Drosophila Pest
L Ometto, A Cestaro, S Ramasamy, A Grassi, S Revadi, S Siozios, ...
Genome biology and evolution 5 (4), 745-757, 2013
Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms
M Falda, S Toppo, A Pescarolo, E Lavezzo, B Di Camillo, A Facchinetti, ...
BMC bioinformatics 13 (4), 1-9, 2012
Downy mildew resistance induced by Trichoderma harzianum T39 in susceptible grapevines partially mimics transcriptional changes of resistant genotypes
M Perazzolli, M Moretto, P Fontana, A Ferrarini, R Velasco, C Moser, ...
BMC genomics 13, 1-19, 2012
Bioinformatic approaches for functional annotation and pathway inference in metagenomics data
C De Filippo, M Ramazzotti, P Fontana, D Cavalieri
Briefings in bioinformatics 13 (6), 696-710, 2012
Characterization of resistance gene analogues (RGAs) in apple (Malus× domestica Borkh.) and their evolutionary history of the Rosaceae family
M Perazzolli, G Malacarne, A Baldo, L Righetti, A Bailey, P Fontana, ...
PloS one 9 (2), e83844, 2014
Transcriptome analysis of Medicago truncatula leaf senescence: similarities and differences in metabolic and transcriptional regulations as compared with Arabidopsis, nodule …
R De Michele, E Formentin, M Todesco, S Toppo, F Carimi, M Zottini, ...
New Phytologist 181 (3), 563-575, 2009
Comparative analysis of expressed sequence tags from different organs of Vitis vinifera L.
C Moser, C Segala, P Fontana, I Salakhudtinov, P Gatto, M Pindo, ...
Functional & integrative genomics 5, 208-217, 2005
Sequencing and assembly of highly heterozygous genome of Vitis vinifera L. cv Pinot Noir: problems and solutions
A Zharkikh, M Troggio, D Pruss, A Cestaro, G Eldrdge, M Pindo, ...
Journal of biotechnology 136 (1-2), 38-43, 2008
The SSEA server for protein secondary structure alignment
P Fontana, E Bindewald, S Toppo, R Velasco, G Valle, SCE Tosatto
Bioinformatics 21 (3), 393-395, 2005
Reducing bias in RNA sequencing data: a novel approach to compute counts
F Finotello, E Lavezzo, L Bianco, L Barzon, P Mazzon, P Fontana, ...
BMC bioinformatics 15 (1), 1-12, 2014
Rapid annotation of anonymous sequences from genome projects using semantic similarities and a weighting scheme in gene ontology
P Fontana, A Cestaro, R Velasco, E Formentin, S Toppo
PLoS One 4 (2), e4619, 2009
Enhancing protein function prediction with taxonomic constraints–The Argot2. 5 web server
E Lavezzo, M Falda, P Fontana, L Bianco, S Toppo
Methods 93, 15-23, 2016
Deconstruction of the (paleo) polyploid grapevine genome based on the analysis of transposition events involving NBS resistance genes
G Malacarne, M Perazzolli, A Cestaro, L Sterck, P Fontana, Y Van de Peer, ...
PloS one 7 (1), e29762, 2012
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