| The MicroArray Quality Control (MAQC) project shows inter-and intraplatform reproducibility of gene expression measurements L Shi, LH Reid, WD Jones, R Shippy, JA Warrington, SC Baker, PJ Collins, ... Nature biotechnology 24 (9), 1151, 2006 | 2210 | 2006 |
| The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models MaQC Consortium Nature biotechnology 28 (8), 827, 2010 | 684 | 2010 |
| A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium Z Su, PP Labaj, S Li, J Thierry-Mieg, D Thierry-Mieg, W Shi, C Wang, ... Nature Biotechnology 32 (9), 903–914, 2014 | 563 | 2014 |
| The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance C Wang, B Gong, PR Bushel, J Thierry-Mieg, D Thierry-Mieg, J Xu, ... Nature biotechnology 32 (9), 926-932, 2014 | 336 | 2014 |
| Cross-platform comparability of microarray technology: intra-platform consistency and appropriate data analysis procedures are essential L Shi, W Tong, H Fang, U Scherf, J Han, RK Puri, FW Frueh, FM Goodsaid, ... BMC bioinformatics 6 (S2), S12, 2005 | 231 | 2005 |
| A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages Y Yu, JC Fuscoe, C Zhao, C Guo, M Jia, T Qing, DI Bannon, L Lancashire, ... Nature communications 5 (1), 1-11, 2014 | 226 | 2014 |
| Comparison of RNA-seq and microarray-based models for clinical endpoint prediction W Zhang, Y Yu, F Hertwig, J Thierry-Mieg, W Zhang, D Thierry-Mieg, ... Genome biology 16 (1), 1-12, 2015 | 223 | 2015 |
| The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies L Shi, WD Jones, RV Jensen, SC Harris, RG Perkins, FM Goodsaid, ... BMC bioinformatics 9 (9), 1-19, 2008 | 222 | 2008 |
| Mold2, Molecular Descriptors from 2D Structures for Chemoinformatics and Toxicoinformatics H Hong, Q Xie, W Ge, F Qian, H Fang, L Shi, Z Su, R Perkins, W Tong Journal of chemical information and modeling 48 (7), 1337-1344, 2008 | 192 | 2008 |
| Next-generation sequencing and its applications in molecular diagnostics Z Su, B Ning, H Fang, H Hong, R Perkins, W Tong, L Shi Expert review of molecular diagnostics 11 (3), 333-343, 2011 | 182 | 2011 |
| An investigation of biomarkers derived from legacy microarray data for their utility in the RNA-seq era Z Su, H Fang, H Hong, L Shi, W Zhang, W Zhang, Y Zhang, Z Dong, ... Genome biology 15 (12), 1-25, 2014 | 100 | 2014 |
| Microarray scanner calibration curves: characteristics and implications L Shi, W Tong, Z Su, T Han, J Han, RK Puri, H Fang, FW Frueh, ... BMC bioinformatics 6 (2), 1-14, 2005 | 90 | 2005 |
| Comparing next-generation sequencing and microarray technologies in a toxicological study of the effects of aristolochic acid on rat kidneys Z Su, Z Li, T Chen, QZ Li, H Fang, D Ding, W Ge, B Ning, H Hong, ... Chemical research in toxicology 24 (9), 1486-1493, 2011 | 85 | 2011 |
| Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures SA Munro, SP Lund, PS Pine, H Binder, DA Clevert, A Conesa, J Dopazo, ... Nature communications 5 (1), 1-10, 2014 | 84 | 2014 |
| Identification of urinary microRNA profiles in rats that may diagnose hepatotoxicity X Yang, J Greenhaw, Q Shi, Z Su, F Qian, K Davis, DL Mendrick, ... Toxicological Sciences 125 (2), 335-344, 2012 | 79 | 2012 |
| ArrayTrack: an FDA and public genomic tool H Fang, SC Harris, Z Su, M Chen, F Qian, L Shi, R Perkins, W Tong Protein Networks and Pathway Analysis, 379-398, 2009 | 65 | 2009 |
| Technical reproducibility of genotyping SNP arrays used in genome-wide association studies H Hong, L Xu, J Liu, WD Jones, Z Su, B Ning, R Perkins, W Ge, K Miclaus, ... PloS one 7 (9), e44483, 2012 | 60 | 2012 |
| The liver toxicity biomarker study: phase I design and preliminary results RN Mcburney, WM Hines, LS Von Tungeln, LK Schnackenberg, ... Toxicologic pathology 37 (1), 52-64, 2009 | 56 | 2009 |
| EADB: an estrogenic activity database for assessing potential endocrine activity J Shen, L Xu, H Fang, AM Richard, JD Bray, RS Judson, G Zhou, ... toxicological sciences 135 (2), 277-291, 2013 | 51 | 2013 |
| Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples H Hong, Z Su, W Ge, L Shi, R Perkins, H Fang, J Xu, JJ Chen, T Han, ... BMC bioinformatics 9 (9), 1-13, 2008 | 51 | 2008 |
