| Acceleration of emergence of bacterial antibiotic resistance in connected microenvironments Q Zhang, G Lambert, D Liao, H Kim, K Robin, C Tung, N Pourmand, ... Science 333 (6050), 1764-1767, 2011 | 597 | 2011 |
| Single-cell analyses of transcriptional heterogeneity during drug tolerance transition in cancer cells by RNA sequencing MCW Lee, FJ Lopez-Diaz, SY Khan, MA Tariq, Y Dayn, CJ Vaske, ... Proceedings of the National Academy of Sciences 111 (44), E4726-E4735, 2014 | 208 | 2014 |
| Whole-transcriptome RNAseq analysis from minute amount of total RNA MA Tariq, HJ Kim, O Jejelowo, N Pourmand Nucleic acids research 39 (18), e120-e120, 2011 | 187 | 2011 |
| Compartmental genomics in living cells revealed by single-cell nanobiopsy P Actis, MM Maalouf, HJ Kim, A Lohith, B Vilozny, RA Seger, N Pourmand ACS nano 8 (1), 546-553, 2014 | 177 | 2014 |
| A comprehensive characterization of the cell-free transcriptome reveals tissue-and subtype-specific biomarkers for cancer detection MH Larson, W Pan, HJ Kim, RE Mauntz, SM Stuart, M Pimentel, Y Zhou, ... Nature communications 12 (1), 1-11, 2021 | 135 | 2021 |
| NanoStriDE: normalization and differential expression analysis of NanoString nCounter data CD Brumbaugh, HJ Kim, M Giovacchini, N Pourmand BMC bioinformatics 12 (1), 1-4, 2011 | 71 | 2011 |
| Non-enzymatic transfer of sequence information under plausible prebiotic conditions F Olasagasti, HJ Kim, N Pourmand, DW Deamer Biochimie 93 (3), 556-561, 2011 | 67 | 2011 |
| HLA haplotyping from RNA-seq data using hierarchical read weighting HJ Kim, N Pourmand PloS one 8 (6), e67885, 2013 | 62 | 2013 |
| Ancient hot and cold genes and chemotherapy resistance emergence A Wu, Q Zhang, G Lambert, Z Khin, RA Gatenby, HJ Kim, N Pourmand, ... Proceedings of the National Academy of Sciences 112 (33), 10467-10472, 2015 | 52 | 2015 |
| Development and validation of an ultradeep next-generation sequencing assay for testing of plasma cell-free DNA from patients with advanced cancer F Janku, S Zhang, J Waters, L Liu, HJ Huang, V Subbiah, DS Hong, ... Clinical Cancer Research 23 (18), 5648-5656, 2017 | 50 | 2017 |
| Distinctive microRNA expression signatures in proton-irradiated mice SY Khan, MA Tariq, JP Perrott, CD Brumbaugh, HJ Kim, MI Shabbir, ... Molecular and cellular biochemistry 382 (1), 225-235, 2013 | 21 | 2013 |
| Molecular probe technology detects bacteria without culture RW Hyman, RP St Onge, H Kim, JS Tamaresis, M Miranda, AM Aparicio, ... BMC microbiology 12 (1), 1-10, 2012 | 18 | 2012 |
| Methods of preparing and analyzing cell-free nucleic acid sequencing libraries MH Larson, HJ Kim, N Eattock, X Yang US Patent 10,487,358, 2019 | 9 | 2019 |
| Differential tagging of RNA for preparation of a cell-free DNA/RNA sequencing library M Larson, HJ Kim, N Eattock, A Jamshidi US Patent 10,144,962, 2018 | 9 | 2018 |
| You cannot tell a book by looking at the cover: Cryptic complexity in bacterial evolution Q Zhang, J Bos, G Tarnopolskiy, JC Sturm, H Kim, N Pourmand, ... Biomicrofluidics 8 (5), 052004, 2014 | 8 | 2014 |
| Alignment-free filtering for cfNA fusion fragments X Yang, Y Saito, A Rao, HJ Kim, P Singh, E Scott, M Larson, W Pan, ... Bioinformatics 35 (14), i225-i232, 2019 | 6 | 2019 |
| Methods and compositions for generating polynucleic acid fragments P Actis, MA Tariq, HJ Kim, N Pourmand US Patent App. 13/693,686, 2013 | 5 | 2013 |
| Methods and compositions for generating polynucleic acid fragments P Actis, MA Tariq, HJ Kim, N Pourmand US Patent App. 13/693,686, 2013 | 5 | 2013 |
| Methods and compositions for generating polynucleic acid fragments P Actis, MA Tariq, HJ Kim, N Pourmand US Patent App. 13/693,686, 2013 | 5 | 2013 |
| DOCTOR OF PHILOSOPHY in BIOMOLECULAR ENGINEERING AND BIOINFORMATICS HJ Kim UNIVERSITY OF CALIFORNIA SANTA CRUZ, 2014 | 4* | 2014 |
Nader PourmandProfessor of Biomolecuar Engineering, UC Santa CruzVerified email at soe.ucsc.edu
