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Justas Dapkūnas
Justas Dapkūnas
Institute of Biotechnology, Life Sciences Center, Vilnius University
Verified email at bti.vu.lt
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Year
SKEMPI 2.0: an updated benchmark of changes in protein–protein binding energy, kinetics and thermodynamics upon mutation
J Jankauskaitė, B Jiménez-García, J Dapkūnas, J Fernández-Recio, ...
Bioinformatics 35 (3), 462-469, 2018
2342018
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment
MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ...
Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019
1112019
Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment
MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ...
Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021
762021
QSAR analysis of blood–brain distribution: The influence of plasma and brain tissue binding
K Lanevskij, J Dapkunas, L Juska, P Japertas, R Didziapetris
Journal of pharmaceutical sciences 100 (6), 2147-2160, 2011
682011
The PPI3D web server for searching, analyzing and modeling protein–protein interactions in the context of 3D structures
J Dapkūnas, A Timinskas, K Olechnovič, M Margelevičius, R Dičiūnas, ...
Bioinformatics 33 (6), 935-937, 2017
542017
Trainable structure–activity relationship model for virtual screening of CYP3A4 inhibition
R Didziapetris, J Dapkunas, A Sazonovas, P Japertas
Journal of computer-aided molecular design 24 (11), 891-906, 2010
372010
Probabilistic prediction of the human CYP3A4 and CYP2D6 metabolism sites
J Dapkunas, A Sazonovas, P Japertas
Chemistry & biodiversity 6 (11), 2101-2106, 2009
222009
Inferring the microscopic surface energy of protein–protein interfaces from mutation data
IH Moal, J Dapkūnas, J Fernández‐Recio
Proteins: Structure, Function, and Bioinformatics 83 (4), 640-650, 2015
152015
Structural modeling of protein complexes: Current capabilities and challenges
J Dapkūnas, K Olechnovič, Č Venclovas
Proteins: Structure, Function, and Bioinformatics 87 (12), 1222-1232, 2019
132019
Impact of AlphaFold on structure prediction of protein complexes: the CASP15‐CAPRI experiment
MF Lensink, G Brysbaert, N Raouraoua, PA Bates, M Giulini, RV Honorato, ...
Proteins: Structure, Function, and Bioinformatics 91 (12), 1658-1683, 2023
122023
Modeling of protein complexes in CASP14 with emphasis on the interaction interface prediction
J Dapkūnas, K Olechnovič, Č Venclovas
Proteins: Structure, Function, and Bioinformatics 89 (12), 1834-1843, 2021
122021
Modeling of protein complexes in CAPRI Round 37 using template‐based approach combined with model selection
J Dapkūnas, K Olechnovič, Č Venclovas
Proteins: Structure, Function, and Bioinformatics 86 (S1), 292-301, 2018
102018
Mapping of Recognition Sites of Monoclonal Antibodies Responsible for the Inhibition of Pneumolysin Functional Activity
I Kucinskaite-Kodze, M Simanavicius, J Dapkunas, M Pleckaityte, ...
Biomolecules 10 (7), 1009, 2020
92020
Prediction of protein assemblies by structure sampling followed by interface‐focused scoring
K Olechnovič, L Valančauskas, J Dapkūnas, Č Venclovas
Proteins: Structure, Function, and Bioinformatics 91 (12), 1724-1733, 2023
82023
Template-Based Modeling of Protein Complexes Using the PPI3D Web Server
J Dapkūnas, Č Venclovas
Protein Structure Prediction, 139-155, 2020
62020
Template‐based modeling of diverse protein interactions in CAPRI rounds 38‐45
J Dapkūnas, V Kairys, K Olechnovič, Č Venclovas
Proteins: Structure, Function, and Bioinformatics 88 (8), 939-947, 2020
52020
Exogenous interleukin-1α signaling negatively impacts acquired chemoresistance and alters cell adhesion molecule expression pattern in colorectal carcinoma cells HCT116
P Grigaitis, V Jonusiene, V Zitkute, J Dapkunas, D Dabkeviciene, ...
Cytokine 114, 38-46, 2019
42019
The COMER web server for protein analysis by homology
J Dapkūnas, M Margelevičius
Bioinformatics 39 (1), btac807, 2023
32023
PIGN-Related Disease in Two Lithuanian Families: A Report of Two Novel Pathogenic Variants, Molecular and Clinical Characterisation
E Siavrienė, Ž Maldžienė, V Mikštienė, G Petraitytė, T Rančelis, ...
Medicina 58 (11), 1526, 2022
22022
Donor Splice Site Variant in SLC9A6 Causes Christianson Syndrome in a Lithuanian Family: A Case Report
G Petraitytė, V Mikštienė, E Siavrienė, L Cimbalistienė, Ž Maldžienė, ...
Medicina 58 (3), 351, 2022
2022
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