Thomas Dandekar
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Conservation of gene order: a fingerprint of proteins that physically interact
T Dandekar, B Snel, M Huynen, P Bork
Trends in biochemical sciences 23 (9), 324-328, 1998
A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks
S Schuster, DA Fell, T Dandekar
Nature biotechnology 18 (3), 326-332, 2000
Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering
S Schuster, T Dandekar, DA Fell, S Schuster, T Dandekar, DA Fell
Trends in biotechnology 17 (2), 53-60, 1999
Identifying functional modules in protein–protein interaction networks: an integrated exact approach
MT Dittrich, GW Klau, A Rosenwald, T Dandekar, T Müller
Bioinformatics 24 (13), i223-i231, 2008
5.8 S-28S rRNA interaction and HMM-based ITS2 annotation
A Keller, T Schleicher, J Schultz, T Müller, T Dandekar, M Wolf
Gene 430 (1-2), 50-57, 2009
Predicting function: from genes to genomes and back
P Bork, T Dandekar, Y Diaz-Lazcoz, F Eisenhaber, M Huynen, Y Yuan
Journal of molecular biology 283 (4), 707-725, 1998
4SALE–a tool for synchronous RNA sequence and secondary structure alignment and editing
PN Seibel, T Müller, T Dandekar, J Schultz, M Wolf
BMC bioinformatics 7, 1-7, 2006
Carbon metabolism of intracellular bacterial pathogens and possible links to virulence
W Eisenreich, T Dandekar, J Heesemann, W Goebel
Nature Reviews Microbiology 8 (6), 401-412, 2010
Identification of a novel iron‐responsive element in murine and human erythroid delta‐aminolevulinic acid synthase mRNA.
T Dandekar, R Stripecke, NK Gray, B Goossen, A Constable, ...
The EMBO journal 10 (7), 1903-1909, 1991
Distinguishing species
T Müller, N Philippi, T Dandekar, J Schultz, M Wolf
Rna 13 (9), 1469-1472, 2007
Long noncoding RNA Chast promotes cardiac remodeling
J Viereck, R Kumarswamy, A Foinquinos, K Xiao, P Avramopoulos, ...
Science translational medicine 8 (326), 326ra22-326ra22, 2016
Pathway alignment: application to the comparative analysis of glycolytic enzymes
T Dandekar, S Schuster, B Snel, M Huynen, P Bork
Biochemical Journal 343 (1), 115-124, 1999
Metabolic interdependence of obligate intracellular bacteria and their insect hosts
E Zientz, T Dandekar, R Gross
Microbiology and Molecular Biology Reviews 68 (4), 745-770, 2004
Single-cell genomics reveals the lifestyle of Poribacteria, a candidate phylum symbiotically associated with marine sponges
A Siegl, J Kamke, T Hochmuth, J Piel, M Richter, C Liang, T Dandekar, ...
The ISME journal 5 (1), 61-70, 2011
Synchronous visual analysis and editing of RNA sequence and secondary structure alignments using 4SALE
PN Seibel, T Müller, T Dandekar, M Wolf
BMC research notes 1, 1-7, 2008
Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames
T Dandekar, M Huynen, JT Regula, B Ueberle, CU Zimmermann, ...
Nucleic acids research 28 (17), 3278-3288, 2000
The linear chromosome of the plant-pathogenic mycoplasma 'Candidatus Phytoplasma mali'
M Kube, B Schneider, H Kuhl, T Dandekar, K Heitmann, AM Migdoll, ...
Bmc Genomics 9, 1-14, 2008
Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniae
S Schuster, T Pfeiffer, F Moldenhauer, I Koch, T Dandekar
Bioinformatics 18 (2), 351-361, 2002
T Dandekar
US Patent 4,777,019, 1988
Processing of the precursors to small nucleolar RNAs and rRNAs requires common components
E Petfalski, T Dandekar, Y Henry, D Tollervey
Molecular and cellular biology 18 (3), 1181-1189, 1998
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