| Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020 | 1668* | 2020 |
| Genomic basis for RNA alterations in cancer PCAWG Transcriptome Core Group Calabrese Claudia 2 Davidson Natalie R. 3 4 5 ... Nature 578 (7793), 129-136, 2020 | 274 | 2020 |
| Activation of transforming growth factor beta 1 signaling in gastric cancer-associated fibroblasts increases their motility, via expression of rhomboid 5 homolog 2, and ability … T Ishimoto, K Miyake, T Nandi, M Yashiro, N Onishi, KK Huang, SJ Lin, ... Gastroenterology 153 (1), 191-204. e16, 2017 | 197 | 2017 |
| A pan-cancer transcriptome analysis reveals pervasive regulation through alternative promoters D Demircioğlu, E Cukuroglu, M Kindermans, T Nandi, C Calabrese, ... Cell 178 (6), 1465-1477. e17, 2019 | 159 | 2019 |
| A Genomic Survey of Positive Selection in Burkholderia pseudomallei Provides Insights into the Evolution of Accidental Virulence T Nandi, C Ong, AP Singh, J Boddey, T Atkins, M Sarkar-Tyson, ... PLoS pathogens 6 (4), e1000845, 2010 | 151 | 2010 |
| VHL Deficiency Drives Enhancer Activation of Oncogenes in Clear Cell Renal Cell Carcinoma X Yao, J Tan, KJ Lim, J Koh, WF Ooi, Z Li, D Huang, M Xing, YS Chan, ... Cancer discovery 7 (11), 1284-1305, 2017 | 131 | 2017 |
| Epigenomic profiling of primary gastric adenocarcinoma reveals super-enhancer heterogeneity WF Ooi, M Xing, C Xu, X Yao, MK Ramlee, MC Lim, F Cao, K Lim, D Babu, ... Nature communications 7 (1), 12983, 2016 | 129 | 2016 |
| Continuing Evolution of Burkholderia mallei Through Genome Reduction and Large-Scale Rearrangements L Losada, CM Ronning, D DeShazer, D Woods, N Fedorova, ... Genome biology and evolution 2, 102-116, 2010 | 126 | 2010 |
| Metagenome-wide association analysis identifies microbial determinants of post-antibiotic ecological recovery in the gut KR Chng, TS Ghosh, YH Tan, T Nandi, IR Lee, AHQ Ng, C Li, ... Nature ecology & evolution 4 (9), 1256-1267, 2020 | 105 | 2020 |
| The Condition-Dependent Transcriptional Landscape of Burkholderia pseudomallei WF Ooi, C Ong, T Nandi, JF Kreisberg, HH Chua, G Sun, Y Chen, ... PLoS genetics 9 (9), e1003795, 2013 | 90 | 2013 |
| Genomic acquisition of a capsular polysaccharide virulence cluster by non-pathogenic Burkholderia isolates BMQ Sim, N Chantratita, WF Ooi, T Nandi, R Tewhey, V Wuthiekanun, ... Genome biology 11, 1-17, 2010 | 90 | 2010 |
| Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles T Nandi, MTG Holden, X Didelot, K Mehershahi, JA Boddey, I Beacham, ... Genome research 25 (1), 129-141, 2015 | 67 | 2015 |
| SETD2 histone modifier loss in aggressive GI stromal tumours KK Huang, JR McPherson, ST Tay, K Das, IB Tan, CCY Ng, NY Chia, ... Gut 65 (12), 1960-1972, 2016 | 54 | 2016 |
| Epigenomic promoter alterations amplify gene isoform and immunogenic diversity in gastric adenocarcinoma A Qamra, M Xing, N Padmanabhan, JJT Kwok, S Zhang, C Xu, YS Leong, ... Cancer discovery 7 (6), 630-651, 2017 | 50 | 2017 |
| Integrated paired-end enhancer profiling and whole-genome sequencing reveals recurrent CCNE1 and IGF2 enhancer hijacking in primary gastric adenocarcinoma WF Ooi, AM Nargund, KJ Lim, S Zhang, M Xing, A Mandoli, JQ Lim, ... Gut 69 (6), 1039-1052, 2020 | 46 | 2020 |
| Protection against Experimental Melioidosis following Immunization with Live Burkholderia thailandensis Expressing a manno-Heptose Capsule AE Scott, TR Laws, RV D'Elia, MGM Stokes, T Nandi, ED Williamson, ... Clinical and Vaccine Immunology 20 (7), 1041-1047, 2013 | 45 | 2013 |
| Atopic dermatitis microbiomes stratify into ecologic dermotypes enabling microbial virulence and disease severity ASL Tay, C Li, T Nandi, KR Chng, AK Andiappan, VS Mettu, C de Cevins, ... Journal of Allergy and Clinical Immunology 147 (4), 1329-1340, 2021 | 35 | 2021 |
| HNF4α pathway mapping identifies wild-type IDH1 as a targetable metabolic node in gastric cancer C Xu, WF Ooi, A Qamra, J Tan, BYJ Chua, SWT Ho, K Das, ZFA Isa, Z Li, ... Gut 69 (2), 231-242, 2020 | 33 | 2020 |
| Genomic basis for RNA alterations revealed by whole-genome analyses of 27 cancer types C Calabrese, NR Davidson, NA Fonseca, Y He, A Kahles, K Lehmann, ... | 25* | 2017 |
| A novel complexity measure for comparative analysis of protein sequences from complete genomes T Nandi, D Dash, R Ghai, C B-Rao, K Kannan, SK Brahmachari, ... Journal of Biomolecular Structure and Dynamics 20 (5), 657-667, 2003 | 24 | 2003 |
Patrick TanDuke-NUS Medical SchoolVerified email at duke-nus.edu.sg
