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Lily A. Chylek
Lily A. Chylek
Postdoctoral Researcher, Harvard Medical School
Email verificata su hms.harvard.edu - Home page
Titolo
Citata da
Citata da
Anno
Rule‐based modeling: a computational approach for studying biomolecular site dynamics in cell signaling systems
LA Chylek, LA Harris, CS Tung, JR Faeder, CF Lopez, WS Hlavacek
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 6 (1), 13-36, 2014
1572014
Receptor-driven ERK pulses reconfigure MAPK signaling and enable persistence of drug-adapted BRAF-mutant melanoma cells
L Gerosa, C Chidley, F Fröhlich, G Sanchez, SK Lim, J Muhlich, JY Chen, ...
Cell systems 11 (5), 478-494. e9, 2020
852020
Phosphorylation site dynamics of early T-cell receptor signaling
LA Chylek, V Akimov, J Dengjel, KTG Rigbolt, B Hu, WS Hlavacek, ...
PloS one 9 (8), e104240, 2014
722014
Modeling for (physical) biologists: an introduction to the rule-based approach
LA Chylek, LA Harris, JR Faeder, WS Hlavacek
Physical biology 12 (4), 045007, 2015
692015
Guidelines for visualizing and annotating rule-based models
LA Chylek, B Hu, ML Blinov, T Emonet, JR Faeder, B Goldstein, ...
Molecular BioSystems 7 (10), 2779-2795, 2011
572011
BioNetFit: a fitting tool compatible with BioNetGen, NFsim and distributed computing environments
BR Thomas, LA Chylek, J Colvin, S Sirimulla, AHA Clayton, WS Hlavacek, ...
Bioinformatics 32 (5), 798-800, 2016
412016
An interaction library for the FcϵRI signaling network
LA Chylek, DA Holowka, BA Baird, WS Hlavacek
T Cell Biology 5, 172, 2014
30*2014
Innovations of the rule-based modeling approach
LA Chylek, EC Stites, RG Posner, WS Hlavacek
Systems Biology: integrative biology and simulation tools, 273-300, 2013
262013
Time-resolved phosphoproteomics reveals scaffolding and catalysis-responsive patterns of SHP2-dependent signaling
V Vemulapalli, LA Chylek, A Erickson, A Pfeiffer, KH Gabriel, ...
Elife 10, e64251, 2021
192021
Timescale separation of positive and negative signaling creates history-dependent responses to IgE receptor stimulation
B Harmon, LA Chylek, Y Liu, ED Mitra, A Mahajan, EA Saada, ...
Scientific reports 7 (1), 15586, 2017
182017
Multimodal surveillance of SARS-CoV-2 at a university enables development of a robust outbreak response framework
BA Petros, JS Paull, CH Tomkins-Tinch, BC Loftness, KC DeRuff, P Nair, ...
Med 3 (12), 883-900. e13, 2022
172022
Modeling biomolecular site dynamics in immunoreceptor signaling systems
LA Chylek, BS Wilson, WS Hlavacek
A Systems Biology Approach to Blood. Springer, 2014
122014
Considerations for the selection and use of disinfectants against SARS-CoV-2 in a health care setting
K Tyan, A Levin, A Avalos-Pacheco, D Plana, EA Rand, H Yang, ...
Open forum infectious diseases 7 (9), ofaa396, 2020
72020
Decoding the language of phosphorylation site dynamics
LA Chylek
Science Signaling 6 (274), jc2-jc2, 2013
62013
Time resolved quantitative phosphoproteomics reveals distinct patterns of SHP2 dependence in EGFR signaling
V Vemulapalli, L Chylek, A Erickson, J LaRochelle, K Subramanian, ...
bioRxiv, 598664, 2019
52019
Systems Biology: Integrative Biology and Simulation Tools
LA Chylek, EC Stites, RG Posner, WS Hlavacek
42013
Quantitative modeling of mast cell signaling
LA Chylek, DA Holowka, BA Baird, WS Hlavacek
Systems Immunology, 213-226, 2018
22018
Using equation-free computation to accelerate network-free stochastic simulation of chemical kinetics
YT Lin, LA Chylek, NW Lemons, WS Hlavacek
The Journal of Physical Chemistry B 122 (24), 6351-6356, 2018
12018
Multimodal surveillance of SARS-CoV-2 at a university enables development of a robust outbreak response framework (preprint)
B Petros, J Paull, C Tomkins-Tinch, B Loftness, K DeRuff, P Nair, G Gionet, ...
2022
Using Mechanistic Models for Analysis of Proteomic Data
LA Chylek
Modeling Biomolecular Site Dynamics: Methods and Protocols, 265-270, 2019
2019
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Articoli 1–20