Federico Zambelli
TitleCited byYear
Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes
F Zambelli, G Pesole, G Pavesi
Nucleic acids research 37 (suppl_2), W247-W252, 2009
2712009
Motif discovery and transcription factor binding sites before and after the next-generation sequencing era
F Zambelli, G Pesole, G Pavesi
Briefings in bioinformatics 14 (2), 225-237, 2012
1222012
A perspective of promoter architecture from the CCAAT box
D Dolfini, F Zambelli, G Pavesi, R Mantovani
Cell cycle 8 (24), 4127-4137, 2009
972009
MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes
G Pavesi, P Mereghetti, F Zambelli, M Stefani, G Mauri, G Pesole
Nucleic acids research 34 (suppl_2), W566-W570, 2006
882006
Identification of pathways directly regulated by SHORT VEGETATIVE PHASE during vegetative and reproductive development in Arabidopsis
V Gregis, F Andrés, A Sessa, RF Guerra, S Simonini, JL Mateos, S Torti, ...
Genome Biology 14 (6), R56, 2013
862013
Tools and data services registry: a community effort to document bioinformatics resources
J Ison, K Rapacki, H Ménager, M Kalaš, E Rydza, P Chmura, C Anthon, ...
Nucleic acids research 44 (D1), D38-D47, 2015
662015
WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences
G Pavesi, F Zambelli, G Pesole
BMC bioinformatics 8 (1), 46, 2007
582007
SpliceAid-F: a database of human splicing factors and their RNA-binding sites
M Giulietti, F Piva, M D’Antonio, P D’Onorio De Meo, D Paoletti, ...
Nucleic acids research 41 (D1), D125-D131, 2012
552012
PscanChIP: finding over-represented transcription factor-binding site motifs and their correlations in sequences from ChIP-Seq experiments
F Zambelli, G Pesole, G Pavesi
Nucleic acids research 41 (W1), W535-W543, 2013
512013
Transcriptional network of p63 in human keratinocytes
S Pozzi, F Zambelli, D Merico, G Pavesi, A Robert, P Maltère, X Gidrol, ...
PloS one 4 (3), e5008, 2009
482009
miR-17-92 fine-tunes MYC expression and function to ensure optimal B cell lymphoma growth
M Mihailovich, M Bremang, V Spadotto, D Musiani, E Vitale, G Varano, ...
Nature communications 6, 8725, 2015
472015
Gain-of-function p53 mutants have widespread genomic locations partially overlapping with p63
E Martynova, S Pozzi, V Basile, D Dolfini, F Zambelli, C Imbriano, ...
Oncotarget 3 (2), 132, 2012
432012
ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing
PL Martelli, M D’Antonio, P Bonizzoni, T Castrignano, AM D’Erchia, ...
Nucleic acids research 39 (suppl_1), D80-D85, 2010
422010
Cscan: finding common regulators of a set of genes by using a collection of genome-wide ChIP-seq datasets
F Zambelli, GM Prazzoli, G Pesole, G Pavesi
Nucleic acids research 40 (W1), W510-W515, 2012
322012
Assessment of orthologous splicing isoforms in human and mouse orthologous genes
F Zambelli, G Pavesi, C Gissi, DS Horner, G Pesole
BMC genomics 11 (1), 534, 2010
262010
Resetting cancer stem cell regulatory nodes upon MYC inhibition
S Galardi, M Savino, F Scagnoli, S Pellegatta, F Pisati, F Zambelli, B Illi, ...
EMBO reports 17 (12), 1872-1889, 2016
222016
Widespread generation of alternative UTRs contributes to sex-specific RNA binding by UNR
M Mihailovich, L Wurth, F Zambelli, I Abaza, C Militti, FM Mancuso, ...
Rna 18 (1), 53-64, 2012
212012
Exalign: a new method for comparative analysis of exon–intron gene structures
G Pavesi, F Zambelli, C Caggese, G Pesole
Nucleic acids research 36 (8), e47-e47, 2008
202008
An acetylation-monoubiquitination switch on lysine 120 of H2B
R Gatta, D Dolfini, F Zambelli, C Imbriano, G Pavesi, R Mantovani
Epigenetics 6 (5), 630-637, 2011
192011
A high definition look at the NF-Y regulome reveals genome-wide associations with selected transcription factors
D Dolfini, F Zambelli, M Pedrazzoli, R Mantovani, G Pavesi
Nucleic acids research 44 (10), 4684-4702, 2016
182016
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Articles 1–20