Sarah Djebali

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Roderic GuigoProfessor of Bioinformatics, Center for Genomic Regulation, Universitat Pompeu FabraVerified email at crg.cat
Dmitri PervouchineSkolkovo Institute for Science and TechnologyVerified email at skoltech.ru
Thomas GingerasProfessor of Functional Genomics, Cold Spring Harbor LaboratoryVerified email at cshl.edu
Michael SammethInstitute of Biophysics Carlos Chagas Filho (IBCCF), Federal University of Rio de Janeiro (UFRJ)Verified email at sammeth.net
Marta MeléGroup Leader at Barcelona Supercomputing CenterVerified email at bsc.es
Rory JohnsonUniversity College DublinVerified email at ucd.ie
Pedro G. FerreiraDepartment of Computer Science, Faculty of Sciences University of Porto; INESC-TECVerified email at fc.up.pt
Taylor Young, MD, MAUniversity of Massachusetts Medical SchoolVerified email at umassmemorial.org
Mark GersteinProfessor of Biomedical Informatics, Yale UniversityVerified email at yale.edu
Tuuli LappalainenSciLifeLab, KTH Royal Institute of Technology & New York Genome CenterVerified email at nygenome.org
Fred A WrightNorth Carolina State UniversityVerified email at ncsu.edu
Gad GetzMassachusetts General Hospital and Broad Institute of Harvard and MITVerified email at broadinstitute.org
Ewan BirneyDirector, EMBL-EBIVerified email at ebi.ac.uk
Zhiping WengProf & Chair, Department of Genomics and Computational Biology, UMASS Medical SchoolVerified email at umassmed.edu
Chao ChengBaylor College of MedicineVerified email at bcm.edu
Xianjun Dong, PhDAssociate Professor, Department of Neurology and of BIDS, Yale UniversityVerified email at yale.edu
Joao CuradoFlomics Biotech, Barcelona, SpainVerified email at flomics.com
Hagen TilgnerPI at Weill Cornell Medicine in New York CityVerified email at med.cornell.edu
Anshul KundajeAssociate Professor, Dept. of Genetics, Dept. of Computer Science, Stanford UniversityVerified email at stanford.edu
Julien LagardeFlomics BiotechVerified email at flomics.com

Sarah Djebali

IRSD, INSERM U1220, Toulouse

Verified email at inserm.fr - Homepage

Gene expression regulation enhancers Transcriptome Chimeras comparative genomics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
An integrated encyclopedia of DNA elements in the human genome TE consortium Nature 489, 57-74, 2012	17080	2012
Landscape of transcription in human cells S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ... Nature 489 (7414), 101-108, 2012	5684	2012
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression T Derrien, R Johnson, G Bussotti, A Tanzer, S Djebali, H Tilgner, ... Genome research 22 (9), 1775-1789, 2012	5435	2012
A comparative encyclopedia of DNA elements in the mouse genome F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ... Nature 515 (7527), 355-364, 2014	1964	2014
The human transcriptome across tissues and individuals M Melé, PG Ferreira, F Reverter, DS DeLuca, J Monlong, M Sammeth, ... Science 348 (6235), 660-665, 2015	1346	2015
An atlas of human long non-coding RNAs with accurate 5′ ends CC Hon, JA Ramilowski, J Harshbarger, N Bertin, OJL Rackham, J Gough, ... Nature 543 (7644), 199-204, 2017	1040	2017
Assessment of transcript reconstruction methods for RNA-seq T Steijger, JF Abril, PG Engström, F Kokocinski, TJ Hubbard, R Guigó, ... Nature methods 10 (12), 1177-1184, 2013	789	2013
A user's guide to the encyclopedia of DNA elements (ENCODE) RM Myers, J Stamatoyannopoulos, M Snyder, I Dunham, RC Hardison, ... PLoS biology 9 (4), 2011	678	2011
Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs H Tilgner, DG Knowles, R Johnson, CA Davis, S Chakrabortty, S Djebali, ... Genome research 22 (9), 1616-1625, 2012	540	2012
Genome-Wide Association Study in Asian Populations Identifies Variants in ETS1 and WDFY4 Associated with Systemic Lupus Erythematosus W Yang, N Shen, DQ Ye, Q Liu, Y Zhang, XX Qian, N Hirankarn, D Ying, ... PLoS genetics 6 (2), e1000841, 2010	461	2010
An encyclopedia of mouse DNA elements (Mouse ENCODE) Mouse ENCODE Consortium, JA Stamatoyannopoulos, M Snyder, ... Genome biology 13, 1-5, 2012	376	2012
Comparative analysis of the transcriptome across distant species MB Gerstein, J Rozowsky, KK Yan, D Wang, C Cheng, JB Brown, ... Nature 512 (7515), 445-448, 2014	337	2014
Modeling gene expression using chromatin features in various cellular contexts X Dong, MC Greven, A Kundaje, S Djebali, JB Brown, C Cheng, ... Genome biology 13, 1-17, 2012	327	2012
Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia PG Ferreira, P Jares, D Rico, G Gómez-López, A Martínez-Trillos, ... Genome research 24 (2), 212-226, 2014	255	2014
A benchmark for RNA-seq quantification pipelines M Teng, MI Love, CA Davis, S Djebali, A Dobin, BR Graveley, S Li, ... Genome biology 17, 1-12, 2016	232	2016
Understanding transcriptional regulation by integrative analysis of transcription factor binding data C Cheng, R Alexander, R Min, J Leng, KY Yip, J Rozowsky, KK Yan, ... Genome research 22 (9), 1658-1667, 2012	200	2012
An encyclopedia of mouse DNA elements (Mouse ENCODE) EC Mouse, JA Stamatoyannopoulos, M Snyder, R Hardison, B Ren, ... Genome Biol 13 (8), 418, 2012	151	2012
Multi-species annotation of transcriptome and chromatin structure in domesticated animals S Foissac, S Djebali, K Munyard, N Vialaneix, A Rau, K Muret, D Esquerré, ... BMC biology 17, 1-25, 2019	116	2019
Gene-specific patterns of expression variation across organs and species A Breschi, S Djebali, J Gillis, DD Pervouchine, A Dobin, CA Davis, ... Genome biology 17, 1-13, 2016	105	2016
Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression DD Pervouchine, S Djebali, A Breschi, CA Davis, PP Barja, A Dobin, ... Nature communications 6 (1), 5903, 2015	93	2015

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