Sandro Bottaro

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Giovanni BussiScuola Internazionale Superiore di Studi Avanzati, Trieste, ItalyEmail verificata su sissa.it
Kresten Lindorff-LarsenLinderstrøm-Lang Centre for Protein Science, Department of Biology, University of CopenhagenEmail verificata su bio.ku.dk
Wouter BoomsmaAssociate Professor, Department of Computer Science, University of CopenhagenEmail verificata su di.ku.dk
Thomas HamelryckDpt. of computer science / Dpt. of biology, University of CopenhagenEmail verificata su binf.ku.dk
Jesper Ferkinghoff-BorgAssociate Professor, Research Director, Novo Nordisk A/SEmail verificata su novonordisk.com
Christian AndreettaUniv. of Copenhagen, Denmark, and Uni Computing, Uni Research, NorwayEmail verificata su uni.no
Alejandro Gil-LeyFlagship LabsEmail verificata su fl80inc.com
Jes FrellsenAssociate Professor, Technical University of Denmark (DTU)Email verificata su dtu.dk
Giovanni PinamontiFreie Universität, BerlinEmail verificata su fu-berlin.de
Simón PobleteUniversidad Austral de ChileEmail verificata su uach.cl
Francesco Di PalmaIstituto Italiano di TecnologiaEmail verificata su iit.it
Robert BestSenior Investigator, National Institutes of HealthEmail verificata su helix.nih.gov
Simon OlssonAssistant Professor, Chalmers University of TechnologyEmail verificata su chalmers.se
Tim HarderResearch Scientist at Philips ResearchEmail verificata su philips.com
Richard André CunhaUniversity of ZurichEmail verificata su chem.uzh.ch
Nils G WalterUniversity of Michigan, Ann ArborEmail verificata su umich.edu
Kristoffer Enøe JohanssonDepartment of Pharmacy, University of CopenhagenEmail verificata su sund.ku.dk
Tone BengtsenPostdoc, machine learning and proteins, Department of Computer Science, University of CopenhagenEmail verificata su bio.ku.dk
Andreas Haahr LarsenUniversity of CopenhagenEmail verificata su sund.ku.dk
Lise ArlethProfessor in Experimental Biophysics, University of CopenhagenEmail verificata su nbi.ku.dk

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Sandro Bottaro

Humanitas University & IRCCS Humanitas Research Hospital

Email verificata su hunimed.eu - Home page

RNA modeling Molecular Dynamics Integrative structural biology Computational Biology


Titolo Ordina per citazioni Ordina per anno Ordina per titolo	Citata da Citata da	Anno
Promoting transparency and reproducibility in enhanced molecular simulations M Bonomi, G Bussi, C Camilloni, GA Tribello, P Banáš, A Barducci, ... Nature methods 16 (8), 670-673, 2019	333	2019
RNA structural dynamics as captured by molecular simulations: A comprehensive overview J Šponer, G Bussi, M Krepl, P Banáš, S Bottaro, RA Cunha, A Gil-Ley, ... Chemical reviews 118 (8), 4177-4338, 2018	293	2018
Biophysical experiments and biomolecular simulations: A perfect match? S Bottaro, K Lindorff-Larsen Science 361 (6400), 355-360, 2018	154	2018
The role of nucleobase interactions in RNA structure and dynamics S Bottaro, F Di Palma, G Bussi Nucleic acids research 42 (21), 13306-13314, 2014	97	2014
Potentials of mean force for protein structure prediction vindicated, formalized and generalized T Hamelryck, M Borg, M Paluszewski, J Paulsen, J Frellsen, C Andreetta, ... PloS one 5 (11), e13714, 2010	88	2010
Computer folding of RNA tetraloops: identification of key force field deficiencies P Kührová, RB Best, S Bottaro, G Bussi, J Šponer, M Otyepka, P Banáš Journal of Chemical Theory and Computation 12 (9), 4534-4548, 2016	87	2016
Conformational ensembles of RNA oligonucleotides from integrating NMR and molecular simulations S Bottaro, G Bussi, SD Kennedy, DH Turner, K Lindorff-Larsen Science Advances 4 (5), eaar8521, 2018	79	2018
Integrating molecular simulation and experimental data: a Bayesian/maximum entropy reweighting approach S Bottaro, T Bengtsen, K Lindorff-Larsen Structural Bioinformatics, 219-240, 2020	71	2020
Free Energy Landscape of GAGA and UUCG RNA Tetraloops S Bottaro, P Banáš, J Sponer, G Bussi Journal of Physical Chemistry Letters 7 (20), 4032-4038, 2016	59	2016
Empirical corrections to the amber RNA force field with target metadynamics A Gil-Ley, S Bottaro, G Bussi Journal of chemical theory and computation 12 (6), 2790-2798, 2016	52	2016
How to learn from inconsistencies: Integrating molecular simulations with experimental data S Orioli, AH Larsen, S Bottaro, K Lindorff-Larsen Computational Approaches for Understanding Dynamical Systems: Protein …, 2020	49	2020
PHAISTOS: A framework for Markov chain Monte Carlo simulation and inference of protein structure W Boomsma, J Frellsen, T Harder, S Bottaro, KE Johansson, P Tian, ... Journal of computational chemistry 34 (19), 1697-1705, 2013	42	2013
PHAISTOS: A framework for Markov chain Monte Carlo simulation and inference of protein structure W Boomsma, J Frellsen, T Harder, S Bottaro, KE Johansson, P Tian, ... Journal of computational chemistry 34 (19), 1697-1705, 2013	42	2013
Variational optimization of an all-atom implicit solvent force field to match explicit solvent simulation data S Bottaro, K Lindorff-Larsen, RB Best Journal of chemical theory and computation 9 (12), 5641-5652, 2013	39	2013
Combining molecular dynamics simulations with small-angle X-ray and neutron scattering data to study multi-domain proteins in solution AH Larsen, Y Wang, S Bottaro, S Grudinin, L Arleth, K Lindorff-Larsen PLOS Computational Biology 16 (4), e1007870, 2020	38	2020
RNA Folding Pathways in Stop-Motion S Bottaro, A Gil-Ley, G Bussi Nucleic Acids Research, 2016	38	2016
Elastic network models for RNA: a comparative assessment with molecular dynamics and SHAPE experiments G Pinamonti, S Bottaro, C Micheletti, G Bussi Nucleic Acids Research 43 (15), 7260-9, 2015	37	2015
Fitting corrections to an RNA force field using experimental data A Cesari, S Bottaro, K Lindorff-Larsen, P Banáš, J Šponer, G Bussi Journal of chemical theory and computation 15 (6), 3425-3431, 2019	36	2019
Accuracy of the pseudopotential approximation in ab initio theoretical spectroscopies E Luppi, HC Weissker, S Bottaro, F Sottile, V Veniard, L Reining, G Onida Physical Review B 78 (24), 245124, 2008	33	2008
Mapping the universe of RNA tetraloop folds S Bottaro, K Lindorff-Larsen Biophysical journal 113 (2), 257-267, 2017	31	2017

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