Simona Bianco
Simona Bianco
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Polymer physics of chromosome large-scale 3D organisation
AM Chiariello, C Annunziatella, S Bianco, A Esposito, M Nicodemi
Scientific reports 6 (1), 1-8, 2016
Polymer physics predicts the effects of structural variants on chromatin architecture
S Bianco, DG Lupiáñez, AM Chiariello, C Annunziatella, K Kraft, ...
Nature genetics 50 (5), 662-667, 2018
Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis
BK Kragesteen, M Spielmann, C Paliou, V Heinrich, R Schöpflin, ...
Nature genetics 50 (10), 1463-1473, 2018
Single-allele chromatin interactions identify regulatory hubs in dynamic compartmentalized domains
AM Oudelaar, JOJ Davies, LLP Hanssen, JM Telenius, R Schwessinger, ...
Nature genetics 50 (12), 1744-1751, 2018
Preformed chromatin topology assists transcriptional robustness of Shh during limb development
C Paliou, P Guckelberger, R Schöpflin, V Heinrich, A Esposito, ...
Proceedings of the National Academy of Sciences 116 (25), 12390-12399, 2019
Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation
N Kubo, H Ishii, X Xiong, S Bianco, F Meitinger, R Hu, JD Hocker, ...
Nature structural & molecular biology 28 (2), 152-161, 2021
Active and poised promoter states drive folding of the extended HoxB locus in mouse embryonic stem cells
M Barbieri, SQ Xie, E Torlai Triglia, AM Chiariello, S Bianco, I de Santiago, ...
Nature structural & molecular biology 24 (6), 515-524, 2017
Release of paused RNA polymerase II at specific loci favors DNA double-strand-break formation and promotes cancer translocations
GI Dellino, F Palluzzi, AM Chiariello, R Piccioni, S Bianco, L Furia, ...
Nature genetics 51 (6), 1011-1023, 2019
Polymer physics indicates chromatin folding variability across single-cells results from state degeneracy in phase separation
M Conte, L Fiorillo, S Bianco, AM Chiariello, A Esposito, M Nicodemi
Nature communications 11 (1), 1-13, 2020
Predicting chromatin architecture from models of polymer physics
S Bianco, AM Chiariello, C Annunziatella, A Esposito, M Nicodemi
Chromosome Research 25 (1), 25-34, 2017
CTCF mediates dosage-and sequence-context-dependent transcriptional insulation by forming local chromatin domains
H Huang, Q Zhu, A Jussila, Y Han, B Bintu, C Kern, M Conte, Y Zhang, ...
Nature genetics 53 (7), 1064-1074, 2021
Cell-type specialization is encoded by specific chromatin topologies
W Winick-Ng, A Kukalev, I Harabula, L Zea-Redondo, D Szabó, M Meijer, ...
Nature 599 (7886), 684-691, 2021
Comparison of the Hi-C, GAM and SPRITE methods using polymer models of chromatin
L Fiorillo, F Musella, M Conte, R Kempfer, AM Chiariello, S Bianco, ...
Nature methods 18 (5), 482-490, 2021
A dynamic folded hairpin conformation is associated with α-globin activation in erythroid cells
AM Chiariello, S Bianco, AM Oudelaar, A Esposito, C Annunziatella, ...
Cell Reports 30 (7), 2125-2135. e5, 2020
Molecular dynamics simulations of the strings and binders switch model of chromatin
C Annunziatella, AM Chiariello, A Esposito, S Bianco, L Fiorillo, ...
Methods 142, 81-88, 2018
Polymer models of the hierarchical folding of the Hox-B chromosomal locus
C Annunziatella, AM Chiariello, S Bianco, M Nicodemi
Physical Review E 94 (4), 042402, 2016
Computational approaches from polymer physics to investigate chromatin folding
S Bianco, AM Chiariello, M Conte, A Esposito, L Fiorillo, F Musella, ...
Current Opinion in Cell Biology 64, 10-17, 2020
Complementary chromosome folding by transcription factors and cohesin
MCF Pereira, CA Brackley, D Michieletto, C Annunziatella, S Bianco, ...
BioRxiv, 305359, 2018
Modeling single-molecule conformations of the HoxD region in mouse embryonic stem and cortical neuronal cells
S Bianco, C Annunziatella, G Andrey, AM Chiariello, A Esposito, L Fiorillo, ...
Cell Reports 28 (6), 1574-1583. e4, 2019
A Polymer Physics Investigation of the Architecture of the Murine Orthologue of the 7q11.23 Human Locus
AM Chiariello, A Esposito, C Annunziatella, S Bianco, L Fiorillo, A Prisco, ...
Frontiers in Neuroscience 11, 559, 2017
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