Simon Moxon

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Tamas DalmayProfessor of RNA Biology, University of East AngliaVerified email at uea.ac.uk
Alex BatemanHead of Protein Sequence Resources, EMBL-EBIVerified email at ebi.ac.uk
Sam Griffiths-JonesFaculty of Biology, Medicine and Health. University of ManchesterVerified email at manchester.ac.uk
Sean R. EddyHHMI & Harvard UniversityVerified email at fas.harvard.edu
Richard DurbinDept of Genetics, University of CambridgeVerified email at cam.ac.uk
Erik SonnhammerProfessor of Bioinformatics, DBB Stockholm University, Science for Life LaboratoryVerified email at scilifelab.se
Gyorgy SzittyaProject Leader, Epigenetics Group, Agricultural Biotechnology Center, HungaryVerified email at abc.hu
David StudholmeUniversity of ExeterVerified email at exeter.ac.uk
Robert D. FinnMicrobiome Informatics Team Leader, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambs, CB10 1SDVerified email at ebi.ac.uk
József BurgyánMezőgazdasági Biotechnológiai KutatóközpontVerified email at abc.hu
Irina MohorianuCambridge Stem Cell InstituteVerified email at cam.ac.uk
Vitantonio PantaleoInstitute for Sustainable Plant Protection CNR-Plant Virology Lab, Unit of BariVerified email at cnr.it
Rachel Rusholme-PilcherEarlham InstituteVerified email at earlham.ac.uk
Corin YeatsCentre for Genomic Pathogen Surveillance, BDI, OxfordVerified email at bdi.ox.ac.uk
Lachlan CoinPeter Doherty Institute for Infection and Immunity and University of Melbourne Centre for CancerVerified email at unimelb.edu.au
Runchun JingPotsdam University Verified email at uni-potsdam.de
Matthew StocksUniversity of East AngliaVerified email at uea.ac.uk
Timo LassmannTelethon Kids InstituteVerified email at telethonkids.org.au
Benjamin Schuster-BöcklerGroup leader, Ludwig Institute for Cancer Research, Big Data Institute, Oxford, UKVerified email at ludwig.ox.ac.uk
FRANCISCO ESTEBAN NICOLASPROFESOR GENÉTICA, UNIVERSIDAD DE MURCIAVerified email at um.es

Simon Moxon

Associate Professor of Bioinformatics, University of East Anglia

Verified email at uea.ac.uk - Homepage

bioinformatics miRNA RNA genomics next generation sequencing


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The Pfam protein families database A Bateman, L Coin, R Durbin, RD Finn, V Hollich, S Griffiths‐Jones, ... Nucleic acids research 32 (suppl 1), D138-D141, 2004	6730	2004
Pfam: clans, web tools and services RD Finn, J Mistry, B Schuster-Böckler, S Griffiths-Jones, V Hollich, ... Nucleic acids research 34 (suppl_1), D247-D251, 2006	2565	2006
Rfam: annotating non-coding RNAs in complete genomes S Griffiths-Jones, S Moxon, M Marshall, A Khanna, SR Eddy, A Bateman Nucleic acids research 33 (suppl_1), D121-D124, 2005	1496	2005
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species KK Dasmahapatra, JR Walters, AD Briscoe, JW Davey, A Whibley, ... Nature 487 (7405), 94, 2012	1048	2012
Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening S Moxon, R Jing, G Szittya, F Schwach, RLR Pilcher, V Moulton, T Dalmay Genome research 18 (10), 1602-1609, 2008	508	2008
Identification of grapevine microRNAs and their targets using high‐throughput sequencing and degradome analysis V Pantaleo, G Szittya, S Moxon, L Miozzi, V Moulton, T Dalmay, J Burgyan The Plant Journal 62 (6), 960-976, 2010	375	2010
A toolkit for analysing large-scale plant small RNA datasets S Moxon, F Schwach, T Dalmay, D MacLean, DJ Studholme, V Moulton Bioinformatics 24 (19), 2252-2253, 2008	293	2008
The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets MB Stocks, S Moxon, D Mapleson, HC Woolfenden, I Mohorianu, L Folkes, ... Bioinformatics 28 (15), 2059-2061, 2012	288	2012
High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families G Szittya, S Moxon, DM Santos, R Jing, MPS Fevereiro, V Moulton, ... BMC genomics 9 (1), 1-9, 2008	288	2008
Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species TC Mathers, Y Chen, G Kaithakottil, F Legeai, ST Mugford, ... Genome biology 18 (1), 1-20, 2017	152	2017
Deep sequencing of viroid-derived small RNAs from grapevine provides new insights on the role of RNA silencing in plant-viroid interaction B Navarro, V Pantaleo, A Gisel, S Moxon, T Dalmay, G Bisztray, F Di Serio, ... PLoS One 4 (11), e7686, 2009	151	2009
Profiling of short RNAs during fleshy fruit development reveals stage‐specific sRNAome expression patterns I Mohorianu, F Schwach, R Jing, S Lopez‐Gomollon, S Moxon, G Szittya, ... The Plant Journal 67 (2), 232-246, 2011	148	2011
Structural and functional analysis of viral siRNAs G Szittya, S Moxon, V Pantaleo, G Toth, RL Rusholme Pilcher, V Moulton, ... PLoS pathogens 6 (4), e1000838, 2010	143	2010
Chromosomal-level assembly of the Asian seabass genome using long sequence reads and multi-layered scaffolding S Vij, H Kuhl, IS Kuznetsova, A Komissarov, AA Yurchenko, ... PLoS genetics 12 (4), e1005954, 2016	128	2016
Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides FE Nicolas, S Moxon, JP de Haro, S Calo, IV Grigoriev, S Torres-Martínez, ... Nucleic acids research 38 (16), 5535-5541, 2010	113	2010
Identification of novel small RNAs in tomato (Solanum lycopersicum) RLR Pilcher, S Moxon, N Pakseresht, V Moulton, K Manning, G Seymour, ... Planta 226 (3), 709-717, 2007	109	2007
Deep sequencing analysis of viral short RNAs from an infected Pinot Noir grapevine V Pantaleo, P Saldarelli, L Miozzi, A Giampetruzzi, A Gisel, S Moxon, ... Virology 408 (1), 49-56, 2010	107	2010
PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing L Folkes, S Moxon, HC Woolfenden, MB Stocks, G Szittya, T Dalmay, ... Nucleic acids research 40 (13), e103-e103, 2012	98	2012
DSYB catalyses the key step of dimethylsulfoniopropionate biosynthesis in many phytoplankton ARJ Curson, BT Williams, BJ Pinchbeck, LP Sims, AB Martínez, ... Nature microbiology 3 (4), 430-439, 2018	78	2018
RNAcentral: a vision for an international database of RNA sequences A Bateman, S Agrawal, E Birney, EA Bruford, JM Bujnicki, G Cochrane, ... Rna 17 (11), 1941-1946, 2011	68	2011

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