Andrea Di Gioacchino

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Simona CoccoVerified email at lps.ens.fr
Remi MonassonCNRS & Ecole Normale SupérieureVerified email at lpt.ens.fr
Sergio CaraccioloProfessore di fisica, Università di MilanoVerified email at mi.infn.it
Enrico M. MalatestaAssistant Professor, Bocconi UniversityVerified email at unibocconi.it
Petr ŠulcArizona State UniversityVerified email at asu.edu
Luca Guido MolinariProfessore associato, Dipartimento di Fisica dell'Universita` degli Studi di MilanoVerified email at unimi.it
Sajid A Marhon, PhDScientific Associate III, Princess Margaret Cancer Centre, University Health Network, TorontoVerified email at uhn.ca
Daniel De CarvalhoProfessor, University of Toronto. Senior Scientist, Princess Margaret Cancer CentreVerified email at uhnresearch.ca
Pietro RotondoUnipr, Dipartimento di Scienze Matematiche, Fisiche e InformaticheVerified email at unipr.it
Jorge Fernandez-de-Cossio-DiazUniversité Paris-Saclay, CNRS, CEA, Institut de Physique Théorique (IPhT)Verified email at ipht.fr
Håvard T LindholmPostdoctoral Fellow at Princess Margaret Cancer CentreVerified email at medisin.uio.no
Nicolas VABRETMount Sinai School of Medicine, New YorkVerified email at mssm.edu
John LaCavaResearch Associate Professor - The Rockefeller UniversityVerified email at rockefeller.edu
Eleanor RieffelNASA Ames Research CenterVerified email at nasa.gov
Marco GherardiUniversità degli Studi di MilanoVerified email at mi.infn.it
Thierry MoraLaboratoire de physique de l'École normale supérieure, Centre national de recherche scientifiqueVerified email at phys.ens.fr
Aleksandra WalczakLaboratoire de physique théorique, École normale supérieureVerified email at lpt.ens.fr
Barbara BraviImperial College LondonVerified email at imperial.ac.uk
Marco MolariBiozentrum - Basel UniversityVerified email at unibas.ch
Jeffrey MarshallQuantum AI Lab at NASA Ames Research CenterVerified email at nasa.gov

Andrea Di Gioacchino

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Verified email at phys.ens.fr - Homepage

Statistical physics Biophysics Inference Combinatorial Optimization Problems


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The heterogeneous landscape and early evolution of pathogen-associated CpG dinucleotides in SARS-CoV-2 A Di Gioacchino, P Sulc, AV Komarova, BD Greenbaum, R Monasson, ... Molecular Biology and Evolution, 2021	28	2021
Generative and interpretable machine learning for aptamer design and analysis of in vitro sequence selection A Di Gioacchino, J Procyk, M Molari, JS Schreck, Y Zhou, Y Liu, ... PLoS Computational Biology 18 (9), e1010561, 2022	24	2022
Perils of embedding for sampling problems J Marshall, A Di Gioacchino, EG Rieffel Physical Review Research 2 (2), 023020, 2020	22	2020
Solution for a bipartite Euclidean traveling-salesman problem in one dimension S Caracciolo, A Di Gioacchino, M Gherardi, EM Malatesta Physical Review E 97 (5), 052109, 2018	15	2018
A transfer-learning approach to predict antigen immunogenicity and T-cell receptor specificity B Bravi, A Di Gioacchino, J Fernandez-de-Cossio-Diaz, AM Walczak, ... ELife 12, e85126, 2023	11*	2023
Selberg integrals in 1D random Euclidean optimization problems S Caracciolo, A Di Gioacchino, EM Malatesta, LG Molinari Journal of Statistical Mechanics: Theory and Experiment 2019 (6), 063401, 2019	11	2019
Exact value for the average optimal cost of the bipartite traveling salesman and two-factor problems in two dimensions R Capelli, S Caracciolo, A Di Gioacchino, EM Malatesta Physical Review E 98 (3), 030101, 2018	11	2018
Repeats mimic pathogen-associated patterns across a vast evolutionary landscape P Šulc, AD Gioacchino, A Solovyov, SA Marhon, S Sun, HT Lindholm, ... bioRxiv, 2021.11. 04.467016, 2021	10*	2021
sgDI-tector: defective interfering viral genome bioinformatics for detection of coronavirus subgenomic RNAs A Di Gioacchino, R Legendre, Y Rahou, V Najburg, P Charneau, ... RNA 28 (3), 277-289, 2022	7	2022
Large deviations of the free energy in the -spin glass spherical model M Pastore, A Di Gioacchino, P Rotondo Physical Review Research 1 (3), 033116, 2019	7	2019
Plastic number and possible optimal solutions for an Euclidean 2-matching in one dimension S Caracciolo, A Di Gioacchino, EM Malatesta Journal of Statistical Mechanics: Theory and Experiment 2018 (8), 083402, 2018	6	2018
Unified Fock space representation of fractional quantum Hall states A Di Gioacchino, LG Molinari, V Erba, P Rotondo Physical Review B 95 (24), 245123, 2017	6	2017
Retroelement decay by the exonuclease XRN1 is a viral mimicry dependency in cancer A Hosseini, HT Lindholm, R Chen, P Mehdipour, SA Marhon, CA Ishak, ... Cell Reports 43 (2), 2024	4	2024
Average optimal cost for the Euclidean TSP in one dimension S Caracciolo, A Di Gioacchino, EM Malatesta, C Vanoni Journal of Physics A: Mathematical and Theoretical 52 (26), 264003, 2019	4	2019
Cancer cells co-evolve with retrotransposons to mitigate viral mimicry S Sun, J Hong, E You, KM Tsanov, J Chacon-Barahona, AD Gioacchino, ... bioRxiv, 2023.05. 19.541456, 2023	3	2023
Designing molecular RNA switches with restricted Boltzmann machines J Fernandez-de-Cossio-Diaz, P Hardouin, FX Lyonnet du Moutier, ... bioRxiv, 2023.05. 10.540155, 2023	2	2023
Euclidean correlations in combinatorial optimization problems: a statistical physics approach A Di Gioacchino arXiv preprint arXiv:2001.03249, 2020	1	2020
Designing Molecular RNA Switches with Restricted Boltzmann Machines S Cocco, JF de Cossío Díaz, P Hardouin, FXL du Moutier, ...		2024
Deciphering the code of viral-host adaptation through maximum entropy models A Di Gioacchino, BD Greenbaum, R Monasson, S Cocco bioRxiv, 2023.10. 28.564530, 2023		2023
Parameter setting for quantum annealing A Di Gioacchino, S Mandra, E Rieffel APS March Meeting Abstracts 2019, R42. 008, 2019		2019

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