David Koppstein
David Koppstein
Postdoctoral Researcher, Berlin Institute for Medical Systems Biology, Berlin, Germany
Verified email at mdc-berlin.de - Homepage
Title
Cited by
Cited by
Year
Principles of long noncoding RNA evolution derived from direct comparison of transcriptomes in 17 species
H Hezroni, D Koppstein, MG Schwartz, A Avrutin, DP Bartel, I Ulitsky
Cell reports 11 (7), 1110-1122, 2015
4042015
Extensive alternative polyadenylation during zebrafish development
I Ulitsky, A Shkumatava, CH Jan, AO Subtelny, D Koppstein, GW Bell, ...
Genome research 22 (10), 2054-2066, 2012
2762012
Global analyses of the effect of different cellular contexts on microRNA targeting
JW Nam, OS Rissland, D Koppstein, C Abreu-Goodger, CH Jan, ...
Molecular cell 53 (6), 1031-1043, 2014
2322014
The RNA polymerase “switch region” is a target for inhibitors
J Mukhopadhyay, K Das, S Ismail, D Koppstein, M Jang, B Hudson, ...
Cell 135 (2), 295-307, 2008
2252008
Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays
A Agarwal, D Koppstein, J Rozowsky, A Sboner, L Habegger, LDW Hillier, ...
BMC genomics 11 (1), 1-16, 2010
1432010
Sequencing the cap-snatching repertoire of H1N1 influenza provides insight into the mechanism of viral transcription initiation
D Koppstein, J Ashour, DP Bartel
Nucleic acids research 43 (10), 5052-5064, 2015
652015
Bulk and single-cell gene expression profiling of SARS-CoV-2 infected human cell lines identifies molecular targets for therapeutic intervention
E Wyler, K Mösbauer, V Franke, A Diag, LT Gottula, R Arsie, F Klironomos, ...
BioRxiv, 2020
542020
B-cell receptor reconstruction from single-cell RNA-seq with VDJPuzzle
S Rizzetto, DNP Koppstein, J Samir, M Singh, JH Reed, CH Cai, AR Lloyd, ...
Bioinformatics 34 (16), 2846-2847, 2018
492018
Lymphoma driver mutations in the pathogenic evolution of an iconic human autoantibody
M Singh, KJL Jackson, JJ Wang, P Schofield, MA Field, D Koppstein, ...
Cell 180 (5), 878-894. e19, 2020
282020
Tumor-infiltrating immune repertoires captured by single-cell barcoding in emulsion
AW Briggs, SJ Goldfless, S Timberlake, BJ Belmont, CR Clouser, ...
BioRxiv, 134841, 2017
242017
Single-cell sequencing reveals αβ chain pairing shapes the T cell repertoire
K Grigaityte, JA Carter, SJ Goldfless, EW Jeffery, RJ Hause, Y Jiang, ...
BioRxiv, 213462, 2017
182017
Transcriptomic profiling of SARS-CoV-2 infected human cell lines identifies HSP90 as target for COVID-19 therapy
E Wyler, K Mösbauer, V Franke, A Diag, LT Gottula, R Arsiè, F Klironomos, ...
Iscience 24 (3), 102151, 2021
52021
Hpv-specific binding molecules
J Sissons, C Brandt, A Croft, A Ebens, H Peper, B Belmont, S Goldfless, ...
US Patent App. 16/338,452, 2019
2019
Directed, unbiased mapping of lentiviral integrations with next generation sequencing in CAR-T cells
TG Johnstone, R Chari, D Koppstein, RJ Hause, R Ponce, AW Briggs, ...
Cancer Research 78 (13 Supplement), 1541-1541, 2018
2018
Comprehensive TIL profiling by simultaneous DNA barcoding of proteins, RNA and natively paired immune receptors from millions of single cells
KL Connor, AW Briggs, SJ Goldfless, S Timberlake, BJ Belmont, ...
Cancer Research 76 (14 Supplement), 1442-1442, 2016
2016
High-throughput sequencing of RNA 5'-and 3'-termini yields insights into viral and vertebrate gene expression
DNP Koppstein
Massachusetts Institute of Technology, 2015
2015
Extensive alternative polyadenylation during zebrafish development
D Koppstein, GW Bell, H Sive, DP Bartel
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Articles 1–17