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Daniel Pollard
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Evolution of genes and genomes on the Drosophila phylogeny
AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, ...
Nature 450 (7167), 203-18, 2007
22412007
Transcription Factors Bind Thousands of Active and Inactive Regions in the Drosophila Blastoderm
X Li, S MacArthur, R Bourgon, D Nix, DA Pollard, VN Iyer, A Hechmer, ...
PLoS biology 6 (2), e27, 2008
5912008
Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting
DA Pollard, VN Iyer, AM Moses, MB Eisen
PLoS genetics 2 (10), e173, 2006
4272006
Hypoglycaemia, liver necrosis and perinatal death in mice lacking all isoforms of phosphoinositide 3-kinase p85α
DA Fruman, F Mauvais-Jarvis, DA Pollard, CM Yballe, D Brazil, ...
Nature genetics 26 (3), 379-382, 2000
3782000
Large-Scale Turnover of Functional Transcription Factor Binding Sites in Drosophila
AM Moses, DA Pollard, DA Nix, VN Iyer, XY Li, MD Biggin, MB Eisen
PLoS computational biology 2 (10), e130, 2006
3042006
MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model
AM Moses, DY Chiang, DA Pollard, VN Iyer, MB Eisen
Genome biology 5, 1-15, 2004
2092004
Benchmarking tools for the alignment of functional noncoding DNA
DA Pollard, CM Bergman, J Stoye, SE Celniker, MB Eisen
BMC bioinformatics 5, 1-17, 2004
1692004
Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments
DA Pollard, AM Moses, VN Iyer, MB Eisen
BMC bioinformatics 7, 1-14, 2006
642006
Design and construction of recombinant inbred lines
DA Pollard
Quantitative Trait Loci (QTL) Methods and Protocols, 31-39, 2012
462012
Empowering statistical methods for cellular and molecular biologists
DA Pollard, TD Pollard, KS Pollard
Molecular Biology of the Cell 30 (12), 1359-1368, 2019
452019
Resistance to Germline RNA Interference in a Caenorhabditis elegans Wild Isolate Exhibits Complexity and Nonadditivity
DA Pollard, MV Rockman
G3: Genes, Genomes, Genetics 3 (6), 941-947, 2013
352013
Whole genome phylogeny of the Drosophila melanogster species subgroup: Widespread discordance with species tree and evidence for incomplete lineage sorting
DA Pollard, VN Iyer, AM Moses, MB Eisen
PLoS Genet 2 (10), 2006
72006
Natural Genetic Variation Modifies Gene Expression Dynamics at the Protein Level During Pheromone Response in Saccharomyces cerevisiae
DA Pollard, CK Asamoto, H Rahnamoun, AS Abendroth, SR Lee, ...
bioRxiv, 090480, 2016
32016
Correction: transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm
X Li, S MacArthur, R Bourgon, D Nix, DA Pollard, VN Iyer, A Hechmer, ...
PLoS Biology 6 (7), e190, 2008
32008
Diversification of small RNA pathways underlies germline RNA interference incompetence in wild Caenorhabditis elegans strains
HT Chou, F Valencia, JC Alexander, AD Bell, D Deb, DA Pollard, ...
Genetics 226 (1), iyad191, 2024
22024
Diversification of small RNA pathways underlies germline RNAi incompetence in wild C. elegans strains
HT Chou, F Valencia, JC Alexander, AD Bell, D Deb, DA Pollard, ...
bioRxiv, 2021.08. 21.457212, 2021
22021
Disruption of a ∼23–24 nucleotide small RNA pathway elevates DNA damage responses in Tetrahymena thermophila
SR Lee, DA Pollard, DF Galati, ML Kelly, B Miller, C Mong, MN Morris, ...
Molecular Biology of the Cell 32 (15), 1335-1346, 2021
22021
Natural variation in codon bias and mRNA folding strength interact synergistically to modify protein expression in Saccharomyces cerevisiae
AN Wienecke, ML Barry, DA Pollard
Genetics 224 (4), iyad113, 2023
2023
A simple mass-action model predicts protein timecourses from mRNA trajectories during a dynamic response in two strains of S. cerevisiae
S Kuo, J Egertson, G Merrihew, M MacCoss, D Pollard, SA Rifkin
bioRxiv, 805846, 2019
2019
A simple mass-action model predicts genome-wide protein timecourses from mRNA trajectories during a dynamic response in two strains of Saccharomyces cerevisiae
S Kuo, JD Egertson, GE Merrihew, MJ MacCoss, DA Pollard, SA Rifkin
2019
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Articles 1–20