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Vivek Bhardwaj
Vivek Bhardwaj
Assistant Professor at Utrecht University
Verified email at uu.nl - Homepage
Title
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Cited by
Year
deepTools2: a next generation web server for deep-sequencing data analysis
F Ramírez, DP Ryan, B Grüning, V Bhardwaj, F Kilpert, AS Richter, ...
Nucleic acids research 44 (Web Server issue), W160, 2016
55792016
High-resolution TADs reveal DNA sequences underlying genome organization in flies
F Ramírez*, V Bhardwaj*, L Arrigoni, KC Lam, BA Grüning, J Villaveces, ...
Nature communications 9 (1), 189, 2018
7152018
DHX9 suppresses RNA processing defects originating from the Alu invasion of the human genome
T Aktaş, İ Avşar Ilık, D Maticzka, V Bhardwaj, C Pessoa Rodrigues, ...
Nature 544 (7648), 115-119, 2017
4662017
pyGenomeTracks: reproducible plots for multivariate genomic datasets
L Lopez-Delisle, L Rabbani, J Wolff, V Bhardwaj, R Backofen, B Grüning, ...
Bioinformatics 37 (3), 422-423, 2021
2742021
Community-driven data analysis training for biology
B Batut, S Hiltemann, A Bagnacani, D Baker, V Bhardwaj, C Blank, ...
Cell systems 6 (6), 752-758. e1, 2018
1822018
Galaxy HiCExplorer: a web server for reproducible Hi-C data analysis, quality control and visualization
J Wolff, V Bhardwaj, S Nothjunge, G Richard, G Renschler, R Gilsbach, ...
Nucleic acids research 46 (W1), W11-W16, 2018
1812018
snakePipes: facilitating flexible, scalable and integrative epigenomic analysis
V Bhardwaj, S Heyne, K Sikora, L Rabbani, M Rauer, F Kilpert, AS Richter, ...
Bioinformatics 35 (22), 4757-4759, 2019
1282019
MOF maintains transcriptional programs regulating cellular stress response
BN Sheikh, W Bechtel-Walz, J Lucci, O Karpiuk, I Hild, B Hartleben, ...
Oncogene 35 (21), 2698-2710, 2016
672016
Creating clear and informative image-based figures for scientific publications
H Jambor, A Antonietti, B Alicea, TL Audisio, S Auer, V Bhardwaj, ...
PLoS biology 19 (3), e3001161, 2021
522021
Large expert-curated database for benchmarking document similarity detection in biomedical literature search
P Brown, Y Zhou
Database 2019, baz085, 2019
342019
Neural metabolic imbalance induced by MOF dysfunction triggers pericyte activation and breakdown of vasculature
BN Sheikh, S Guhathakurta, TH Tsang, M Schwabenland, G Renschler, ...
Nature cell biology 22 (7), 828-841, 2020
322020
Alu-miRNA interactions modulate transcript isoform diversity in stress response and reveal signatures of positive selection
R Pandey, A Bhattacharya*, V Bhardwaj*, V Jha, AK Mandal, M Mukerji
Scientific reports 6 (1), 1-18, 2016
242016
Single-cell sortChIC identifies hierarchical chromatin dynamics during hematopoiesis
P Zeller, J Yeung, H Viñas Gaza, BA de Barbanson, V Bhardwaj, ...
Nature Genetics 55 (2), 333-345, 2023
232023
The NSL complex-mediated nucleosome landscape is required to maintain transcription fidelity and suppression of transcription noise
KC Lam, HR Chung, G Semplicio, SS Iyer, A Gaub, V Bhardwaj, H Holz, ...
Genes & Development 33 (7-8), 452-465, 2019
182019
MAPCap allows high-resolution detection and differential expression analysis of transcription start sites
V Bhardwaj, G Semplicio, NU Erdogdu, T Manke, A Akhtar
Nature Communications 10 (1), 3219, 2019
172019
Draft genome sequence of urease-producing Sporosarcina pasteurii with potential application in biocement production
PK Tiwari, K Joshi, R Rehman, V Bhardwaj, KV Shamsudheen, ...
Genome announcements 2 (1), 10.1128/genomea. 01256-13, 2014
112014
The Zebrafish GenomeWiki: a crowdsourcing approach to connect the long tail for zebrafish gene annotation
M Singh, D Bhartiya, J Maini, M Sharma, AR Singh, S Kadarkaraisamy, ...
Database 2014, bau011, 2014
92014
Acute multi-level response to defective de novo chromatin assembly in S-phase
J Dreyer, G Ricci, J van den Berg, V Bhardwaj, J Funk, C Armstrong, ...
bioRxiv, 2024
12024
T-ChIC: multi-omic detection of histone modifications and full-length transcriptomes in the same single cell
P Zeller, M Blotenburg, V Bhardwaj, BA de Barbanson, F Salmen, ...
bioRxiv, 2024.05. 09.593364, 2024
2024
Stem cell culture conditions affect in vitro differentiation potential and efficiency of mouse gastruloid development
M Blotenburg, L Suurenbroek, V Bhardwaj, P Zeller
bioRxiv, 2024.05. 09.593319, 2024
2024
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