Sergei Krivov
TitleCited byYear
Hidden complexity of free energy surfaces for peptide (protein) folding
SV Krivov, M Karplus
Proceedings of the National Academy of Sciences 101 (41), 14766-14770, 2004
3502004
Free energy disconnectivity graphs: Application to peptide models
SV Krivov, M Karplus
The Journal of chemical physics 117 (23), 10894-10903, 2002
1752002
One-dimensional free-energy profiles of complex systems: Progress variables that preserve the barriers
SV Krivov, M Karplus
The journal of physical chemistry B 110 (25), 12689-12698, 2006
1142006
Diffusive reaction dynamics on invariant free energy profiles
SV Krivov, M Karplus
Proceedings of the National Academy of Sciences 105 (37), 13841-13846, 2008
992008
One-dimensional barrier-preserving free-energy projections of a β-sheet miniprotein: New insights into the folding process
SV Krivov, S Muff, A Caflisch, M Karplus
The Journal of Physical Chemistry B 112 (29), 8701-8714, 2008
882008
The free energy landscape analysis of protein (FIP35) folding dynamics
SV Krivov
The journal of physical chemistry B 115 (42), 12315-12324, 2011
552011
Importance of metastable states in the free energy landscapes of polypeptide chains
S Auer, MA Miller, SV Krivov, CM Dobson, M Karplus, M Vendruscolo
Physical review letters 99 (17), 178104, 2007
502007
Calculation of free-energy differences by confinement simulations. Application to peptide conformers
M Cecchini, SV Krivov, M Spichty, M Karplus
The Journal of Physical Chemistry B 113 (29), 9728-9740, 2009
482009
Potential energy surfaces and conformational transitions in biomolecules: a successive confinement approach applied to a solvated tetrapeptide
SV Krivov, SF Chekmarev, M Karplus
Physical review letters 88 (3), 038101, 2002
432002
Is protein folding sub-diffusive?
SV Krivov
PLoS computational biology 6 (9), e1000921, 2010
372010
On reaction coordinate optimality
SV Krivov
Journal of chemical theory and computation 9 (1), 135-146, 2012
332012
Folding time distributions as an approach to protein folding kinetics
SF Chekmarev, SV Krivov, M Karplus
The Journal of Physical Chemistry B 109 (11), 5312-5330, 2005
282005
Numerical construction of the p fold (committor) reaction coordinate for a Markov process
SV Krivov
The Journal of Physical Chemistry B 115 (39), 11382-11388, 2011
252011
Hierarchical global optimization of quasiseparable systems: Application to Lennard-Jones clusters
SV Krivov
Physical Review E 66 (2), 025701, 2002
222002
Analysis of the free-energy surface of proteins from reversible folding simulations
LR Allen, SV Krivov, E Paci
PLoS computational biology 5 (7), e1000428, 2009
212009
Confinement of the molecular dynamics trajectory to a specified catchment area on the potential surface
SF Chekmarev, SV Krivov
Chemical physics letters 287 (5-6), 719-724, 1998
201998
Free-energy landscapes of proteins in the presence and absence of force
ZT Yew, S Krivov, E Paci
The Journal of Physical Chemistry B 112 (51), 16902-16907, 2008
172008
Total and fractional densities of states from caloric relations
SF Chekmarev, SV Krivov
Physical Review E 57 (2), 2445, 1998
171998
High-resolution free-energy landscape analysis of α-helical protein folding: HP35 and its double mutant
PV Banushkina, SV Krivov
Journal of chemical theory and computation 9 (12), 5257-5266, 2013
152013
Optimal dimensionality reduction of complex dynamics: the chess game as diffusion on a free-energy landscape
SV Krivov
Physical Review E 84 (1), 011135, 2011
152011
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Articles 1–20