|Whole-genome analyses resolve early branches in the tree of life of modern birds|
ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde, C Li, SYW Ho, ...
Science 346, 1320-1331, 2014
|Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales|
BC Faircloth, JE McCormack, NG Crawford, MG Harvey, RT Brumfield, ...
Systematic Biology 61, 717-726, 2012
|Applications of next-generation sequencing to phylogeography and phylogenetics|
JE McCormack, SM Hird, AJ Zellmer, BC Carstens, RT Brumfield
Molecular Phylogenetics and Evolution 66, 526–538, 2013
|The drivers of tropical speciation|
BT Smith, JE McCormack, AM Cuervo, MJ Hickerson, A Aleixo, ...
Nature 515, 406–409, 2014
|A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing|
JE McCormack, MG Harvey, BC Faircloth, NG Crawford, TC Glenn, ...
PLoS One 8, e54848, 2013
|More than 1000 ultraconserved elements provide evidence that turtles are the sister group of archosaurs|
NG Crawford, BC Faircloth, JE McCormack, RT Brumfield, K Winker, ...
Biology Letters 8, 783-786, 2012
|Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis|
JE McCormack, BC Faircloth, NG Crawford, PA Gowaty, RT Brumfield, ...
Genome Research 22, 746-754, 2012
|Does niche divergence accompany allopatric divergence in Aphelocoma jays as predicted under ecological speciation?: insights from tests with niche models|
JE McCormack, AJ Zellmer, LL Knowles
Evolution 64, 1231-1244, 2010
|Calibrating divergence times on species trees versus gene trees: implications for speciation history of Aphelocoma jays|
JE McCormack, J Heled, KS Delaney, AT Peterson, LL Knowles
Evolution 65, 184-202, 2011
|Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs|
RE Green, EL Braun, J Armstrong, D Earl, N Nguyen, G Hickey, ...
Science 346, 1254449, 2014
|Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics|
SV Edwards, Z Xi, A Janke, BC Faircloth, JE McCormack, TC Glenn, ...
Molecular Phylogenetics and Evolution 94, 447-462, 2016
|Recent postglacial range expansion drives the rapid diversification of a songbird lineage in the genus Junco|
B Milá, JE McCormack, G Castañeda, RK Wayne, TB Smith
Proceedings of the Royal Society B: Biological Sciences 274, 2653-2660, 2007
|Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes|
JA St John, EL Braun, SR Isberg, LG Miles, AY Chong, J Gongora, ...
Genome Biology 13, 415, 2012
|Sequence capture of ultraconserved elements from bird museum specimens|
JE McCormack, WLE Tsai, BC Faircloth
Molecular Ecology Resources 16, 1189-1203, 2016
|Maximum likelihood estimates of species trees: how accuracy of phylogenetic inference depends upon the divergence history and sampling design|
JE McCormack, H Huang, LL Knowles
Systematic Biology 58, 501-508, 2010
|Speciation in the highlands of Mexico: genetic and phenotypic divergence in the Mexican jay (Aphelocoma ultramarina)|
JE McCormack, AT Peterson, E Bonaccorso, TB Smith
Molecular Ecology 17, 2505-2521, 2008
|Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences|
JE McCormack, JM Maley, SM Hird, EP Derryberry, GR Graves, ...
Molecular Phylogenetics and Evolution 62, 397-406, 2012
|Landscape genetics of California mule deer (Odocoileus hemionus): the roles of ecological and historical factors in generating differentiation|
KM Pease, AH Freedman, JP Pollinger, JE McCormack, W Buermann, ...
Molecular Ecology 18, 1848-1862, 2009
|Integrating paleoecology and genetics of bird populations in two sky island archipelagos|
J McCormack, B Bowen, T Smith
BMC Biology 6, 28, 2008
JE McCormack, H Huang, LL Knowles
Encyclopedia of Islands 4, 841-843, 2009