|Genetic effects on gene expression across human tissues|
Nature 550 (7675), 204-213, 2017
|Dynamic landscape and regulation of RNA editing in mammals|
MH Tan, Q Li, R Shanmugam, R Piskol, J Kohler, AN Young, KI Liu, ...
Nature 550 (7675), 249-254, 2017
|Estimation of alternative splicing isoform frequencies from RNA-Seq data|
M Nicolae, S Mangul, I Măndoiu, A Zelikovsky
Algorithms in Bioinformatics, 202-214, 2010
|Inferring viral quasispecies spectra from 454 pyrose-quencing reads|
I Astrovskaya, B Tork, S Mangul, K Westbrooks, I Măndoiu, P Balfe, ...
BMC Bioinformatics 12 (Suppl 6), S1, 2011
|The GTEx Consortium atlas of genetic regulatory effects across human tissues|
Science 369 (6509), 1318-1330, 2020
|Co-expression networks reveal the tissue-specific regulation of transcription and splicing|
A Saha, Y Kim, ADH Gewirtz, B Jo, C Gao, IC McDowell, BE Engelhardt, ...
Genome research 27 (11), 1843-1858, 2017
|Accurate viral population assembly from ultra-deep sequencing data|
S Mangul, NC Wu, N Mancuso, A Zelikovsky, R Sun, E Eskin
Bioinformatics 30 (12), i329-i337, 2014
|Systematic benchmarking of omics computational tools|
S Mangul, LS Martin, BL Hill, AKM Lam, MG Distler, A Zelikovsky, E Eskin, ...
Nature communications 10 (1), 1-11, 2019
|Local genetic effects on gene expression across 44 human tissues|
F Aguet, AA Brown, SE Castel, JR Davis, P Mohammadi, AV Segre, ...
BiorXiv, 074450, 2016
|Transcriptome analysis in whole blood reveals increased microbial diversity in schizophrenia|
LMO Loohuis, S Mangul, APS Ori, G Jospin, D Koslicki, HT Yang, T Wu, ...
Translational psychiatry 8 (1), 1-9, 2018
|Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis|
F Yang, J Wang, BL Pierce, LS Chen, F Aguet, KG Ardlie, BB Cummings, ...
Genome research 27 (11), 1859-1871, 2017
|A comprehensive map of genetic variation in the world’s largest ethnic group—Han Chinese|
CWK Chiang, S Mangul, C Robles, S Sankararaman
Molecular biology and evolution 35 (11), 2736-2750, 2018
|Intratumoral CD4+ T Cells Mediate Anti-tumor Cytotoxicity in Human Bladder Cancer|
DY Oh, SS Kwek, SS Raju, T Li, E McCarthy, E Chow, D Aran, A Ilano, ...
|Improving the usability and archival stability of bioinformatics software|
S Mangul, LS Martin, E Eskin, R Blekhman
Genome biology 20 (1), 1-3, 2019
|CRISPR-mediated VHL knockout generates an improved model for metastatic renal cell carcinoma|
S Schokrpur, J Hu, DL Moughon, P Liu, LC Lin, K Hermann, S Mangul, ...
Scientific reports 6, 29032, 2016
|Challenges and recommendations to improve the installability and archival stability of omics computational tools|
S Mangul, T Mosqueiro, RJ Abdill, D Duong, K Mitchell, V Sarwal, B Hill, ...
PLoS biology 17 (6), e3000333, 2019
|Cell type–specific genetic regulation of gene expression across human tissues|
S Kim-Hellmuth, F Aguet, M Oliva, M Muņoz-Aguirre, S Kasela, V Wucher, ...
Science 369 (6509), 2020
|An integer programming approach to novel transcript reconstruction from paired-end RNA-Seq reads|
S Mangul, A Caciula, S Al Seesi, D Brinza, AR Banday, R Kanadia
Proceedings of the ACM Conference on Bioinformatics, Computational Biology …, 2012
|ROP: dumpster diving in RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues|
S Mangul, HT Yang, N Strauli, F Gruhl, HT Porath, K Hsieh, L Chen, ...
Genome biology 19 (1), 1-12, 2018
|Long single-molecule reads can resolve the complexity of the influenza virus composed of rare, closely related mutant variants|
A Artyomenko, NC Wu, S Mangul, E Eskin, R Sun, A Zelikovsky
Journal of Computational Biology 24 (6), 558-570, 2017