Face mask use in the general population and optimal resource allocation during the COVID-19 pandemic CJ Worby, HH Chang Nature communications 11 (1), 4049, 2020 | 350 | 2020 |
Within-host bacterial diversity hinders accurate reconstruction of transmission networks from genomic distance data CJ Worby, M Lipsitch, WP Hanage PLoS computational biology 10 (3), e1003549, 2014 | 172 | 2014 |
On the relative role of different age groups in influenza epidemics CJ Worby, SS Chaves, J Wallinga, M Lipsitch, L Finelli, E Goldstein Epidemics 13, 10-16, 2015 | 165 | 2015 |
Shared genomic variants: identification of transmission routes using pathogen deep-sequence data CJ Worby, M Lipsitch, WP Hanage American journal of epidemiology 186 (10), 1209-1216, 2017 | 98 | 2017 |
THE REAL McCOIL: A method for the concurrent estimation of the complexity of infection and SNP allele frequency for malaria parasites HH Chang, CJ Worby, A Yeka, J Nankabirwa, MR Kamya, SG Staedke, ... PLoS computational biology 13 (1), e1005348, 2017 | 95 | 2017 |
Bayesian reconstruction of transmission within outbreaks using genomic variants N De Maio, CJ Worby, DJ Wilson, N Stoesser PLoS computational biology 14 (4), e1006117, 2018 | 75 | 2018 |
Longitudinal multi-omics analyses link gut microbiome dysbiosis with recurrent urinary tract infections in women CJ Worby, HL Schreiber IV, TJ Straub, LR van Dijk, RA Bronson, ... Nature microbiology 7 (5), 630-639, 2022 | 72 | 2022 |
Reconstructing transmission trees for communicable diseases using densely sampled genetic data CJ Worby, PD O'Neill, T Kypraios, JV Robotham, D De Angelis, ... The annals of applied statistics 10 (1), 395, 2016 | 65 | 2016 |
Microbial genomics of ancient plagues and outbreaks CP Andam, CJ Worby, Q Chang, MG Campana Trends in microbiology 24 (12), 978-990, 2016 | 60 | 2016 |
Estimating the Effectiveness of Isolation and Decolonization Measures in Reducing Transmission of Methicillin-resistant Staphylococcus aureus in Hospital General … CJ Worby, D Jeyaratnam, JV Robotham, T Kypraios, PD O'neill, ... American journal of Epidemiology 177 (11), 1306-1313, 2013 | 57 | 2013 |
The distribution of pairwise genetic distances: a tool for investigating disease transmission CJ Worby, HH Chang, WP Hanage, M Lipsitch Genetics 198 (4), 1395-1404, 2014 | 51 | 2014 |
StrainGE: a toolkit to track and characterize low-abundance strains in complex microbial communities LR van Dijk, BJ Walker, TJ Straub, CJ Worby, A Grote, HL Schreiber IV, ... Genome biology 23 (1), 74, 2022 | 43 | 2022 |
On the relative role of different age groups during epidemics associated with respiratory syncytial virus E Goldstein, HH Nguyen, P Liu, C Viboud, CA Steiner, CJ Worby, ... The Journal of infectious diseases 217 (2), 238-244, 2018 | 41 | 2018 |
Impact of mupirocin resistance on the transmission and control of healthcare-associated MRSA SR Deeny, CJ Worby, O Tosas Auguet, BS Cooper, J Edgeworth, ... Journal of Antimicrobial Chemotherapy 70 (12), 3366-3378, 2015 | 41 | 2015 |
Establishing the role of the gut microbiota in susceptibility to recurrent urinary tract infections CJ Worby, BS Olson, KW Dodson, AM Earl, SJ Hultgren The Journal of Clinical Investigation 132 (5), 2022 | 26 | 2022 |
Acquisition of antibiotic-resistant bacteria by US international travelers G Mellon, SE Turbett, C Worby, E Oliver, AT Walker, M Walters, P Kelly, ... New England Journal of Medicine 382 (14), 1372-1374, 2020 | 26 | 2020 |
Identifying the effect of patient sharing on between-hospital genetic differentiation of methicillin-resistant Staphylococcus aureus HH Chang, J Dordel, T Donker, CJ Worby, EJ Feil, WP Hanage, ... Genome medicine 8, 1-10, 2016 | 26 | 2016 |
'SEEDY'(Simulation of Evolutionary and Epidemiological Dynamics): An R Package to Follow Accumulation of Within-Host Mutation in Pathogens CJ Worby, TD Read PloS one 10 (6), e0129745, 2015 | 26 | 2015 |
Inter-species geographic signatures for tracing horizontal gene transfer and long-term persistence of carbapenem resistance R Salamzade, AL Manson, BJ Walker, T Brennan-Krohn, CJ Worby, P Ma, ... Genome medicine 14 (1), 37, 2022 | 24 | 2022 |
Acquisition and long-term carriage of multidrug-resistant organisms in US international travelers CJ Worby, AM Earl, SE Turbett, M Becker, SR Rao, E Oliver, ... Open Forum Infectious Diseases 7 (12), ofaa543, 2020 | 24 | 2020 |