Florian Jupe
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Epigenomic diversity in a global collection of Arabidopsis thaliana accessions
T Kawakatsu, SC Huang, F Jupe, E Sasaki, RJ Schmitz, MA Urich, ...
Cell 166 (2), 492-505, 2016
Identification and localisation of the NB-LRR gene family within the potato genome
F Jupe, L Pritchard, GJ Etherington, K MacKenzie, PJA Cock, F Wright, ...
BMC genomics 13 (1), 1-14, 2012
Resistance gene enrichment sequencing (R en S eq) enables reannotation of the NB‐LRR gene family from sequenced plant genomes and rapid mapping of resistance loci in …
F Jupe, K Witek, W Verweij, J Śliwka, L Pritchard, GJ Etherington, ...
The Plant Journal 76 (3), 530-544, 2013
High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell
TP Michael, F Jupe, F Bemm, ST Motley, JP Sandoval, C Lanz, O Loudet, ...
Nature communications 9 (1), 1-8, 2018
Accelerated cloning of a potato late blight–resistance gene using RenSeq and SMRT sequencing
K Witek, F Jupe, A Witek, D Baker, MD Clark, JDG Jones
Nature biotechnology 34 (6), 656-660, 2016
Defining the full tomato NB-LRR resistance gene repertoire using genomic and cDNA RenSeq
G Andolfo, F Jupe, K Witek, GJ Etherington, MR Ercolano, JDG Jones
BMC plant biology 14 (1), 1-12, 2014
Elevating crop disease resistance with cloned genes
JDG Jones, K Witek, W Verweij, F Jupe, D Cooke, S Dorling, L Tomlinson, ...
Philosophical Transactions of the Royal Society B: Biological Sciences 369 …, 2014
NLR-parser: rapid annotation of plant NLR complements
B Steuernagel, F Jupe, K Witek, JDG Jones, BBH Wulff
Bioinformatics 31 (10), 1665-1667, 2015
The complex architecture and epigenomic impact of plant T-DNA insertions
F Jupe, AC Rivkin, TP Michael, M Zander, ST Motley, JP Sandoval, ...
PLoS genetics 15 (1), e1007819, 2019
Hypersensitive response to Potato virus Y in potato cultivar Sárpo Mira is conferred by the Ny-Smira gene located on the long arm of chromosome IX
I Tomczyńska, F Jupe, I Hein, W Marczewski, J Śliwka
Molecular Breeding 34 (2), 471-480, 2014
Identification and rapid mapping of a gene conferring broad-spectrum late blight resistance in the diploid potato species Solanum verrucosum through DNA capture technologies
X Chen, D Lewandowska, MR Armstrong, K Baker, TY Lim, M Bayer, ...
Theoretical and Applied Genetics 131 (6), 1287-1297, 2018
Targeted capture and sequencing of gene-sized DNA molecules.
M Giolai, P Paajanen, W Verweij, L Percival-Alwyn, D Baker, K Witek, ...
BioTechniques 61 (6), 315, 2016
Albugo candida race diversity, ploidy and host‐associated microbes revealed using DNA sequence capture on diseased plants in the field
A Jouet, DGO Saunders, M McMullan, B Ward, O Furzer, F Jupe, V Cevik, ...
New Phytologist 221 (3), 1529-1543, 2019
Genomic DNA library preparation for resistance gene enrichment and sequencing (RenSeq) in plants
F Jupe, X Chen, W Verweij, K Witek, JDG Jones, I Hein
Plant-Pathogen Interactions: Methods and Protocols, 291-303, 2014
Epigenetic silencing of a multifunctional plant stress regulator
M Zander, BC Willige, Y He, TA Nguyen, AE Langford, R Nehring, ...
Elife 8, e47835, 2019
High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell
TP Michael, F Jupe, F Bemm, ST Motley, JP Sandoval, O Loudet, ...
bioRxiv, 149997, 2017
The complex architecture of plant transgene insertions
F Jupe, TP Michael, AC Rivkin, M Zander, ST Motley, JP Sandoval, ...
bioRxiv, 282772, 2018
Identification of Avramr1 from Phytophthora infestans using long read and cDNA pathogen‐enrichment sequencing (PenSeq)
X Lin, T Song, S Fairhead, K Witek, A Jouet, F Jupe, AI Witek, HS Karki, ...
Molecular plant pathology 21 (11), 1502-1512, 2020
A complex resistance locus in Solanum americanum recognizes a conserved Phytophthora effector
K Witek, X Lin, HS Karki, F Jupe, AI Witek, B Steuernagel, R Stam, ...
BioRxiv, 2020
SMRT RenSeq protocol
K Witek, F Jupe, AI Witek, D Baker, MD Clark, JDG Jones
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