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Hideo Doi
Hideo Doi
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Jahr
Machine learning-aided analysis for complex local structure of liquid crystal polymers
H Doi, KZ Takahashi, K Tagashira, J Fukuda, T Aoyagi
Scientific reports 9 (1), 16370, 2019
392019
Dissipative particle dynamics (DPD) simulations with fragment molecular orbital (FMO) based effective parameters for 1-Palmitoyl-2-oleoyl phosphatidyl choline (POPC) membrane
H Doi, K Okuwaki, Y Mochizuki, T Ozawa, K Yasuoka
Chemical Physics Letters 684, 427-432, 2017
332017
Theoretical analyses on water cluster structures in polymer electrolyte membrane by using dissipative particle dynamics simulations with fragment molecular orbital based …
K Okuwaki, Y Mochizuki, H Doi, S Kawada, T Ozawa, K Yasuoka
RSC advances 8 (60), 34582-34595, 2018
292018
Fragment molecular orbital based parametrization procedure for mesoscopic structure prediction of polymeric materials
K Okuwaki, Y Mochizuki, H Doi, T Ozawa
The Journal of Physical Chemistry B 122 (1), 338-347, 2018
242018
Mining of effective local order parameters for classifying crystal structures: A machine learning study
H Doi, KZ Takahashi, T Aoyagi
The Journal of chemical physics 152 (21), 2020
202020
Folding simulation of small proteins by dissipative particle dynamics (DPD) with non-empirical interaction parameters based on fragment molecular orbital calculations
K Okuwaki, H Doi, K Fukuzawa, Y Mochizuki
Applied Physics Express 13 (1), 017002, 2019
192019
Influence of Trimethylamine N-Oxide (TMAO) on the Three-dimensional Distribution and Alignment of Solvent Molecules in Aqueous Solution
H Doi, Y Watanabe, M Aida
Chemistry Letters 43 (6), 865-867, 2014
182014
Stabilization mechanism for a nonfibrillar amyloid β oligomer based on formation of a hydrophobic core determined by dissipative particle dynamics
R Kawai, S Chiba, K Okuwaki, R Kanada, H Doi, M Ono, Y Mochizuki, ...
ACS Chemical Neuroscience 11 (3), 385-394, 2020
172020
Searching local order parameters to classify water structures of ice Ih, Ic, and liquid
H Doi, KZ Takahashi, T Aoyagi
The Journal of Chemical Physics 154 (16), 2021
152021
An automated framework to evaluate effective interaction parameters for dissipative particle dynamics simulations based on the fragment molecular orbital (FMO) method
K Okuwaki, H Doi, Y Mochizuki
JOURNAL OF COMPUTER CHEMISTRY-JAPAN 17 (2), 102-109, 2018
112018
Comparative study on the deposition of enzyme-entrapped membranes with spatial homogeneity for bioimaging
T Iwata, H Doi, K Okumura, T Horio, T Hattori, K Takahashi, K Sawada
Sensors and Actuators B: Chemical 239, 800-806, 2017
112017
Application of TensorFlow to recognition of visualized results of fragment molecular orbital (FMO) calculations
S Saitou, J Iijima, M Fujimoto, Y Mochizuki, K Okuwaki, H Doi, Y Komeiji
Chem-Bio Informatics Journal 18, 58-69, 2018
82018
A New Treatment for Water near the Interface between Lipid Membrane and Silica in Dissipative Particle Dynamics Simulation
H Doi, K Okuwaki, Y Mochizuki, T Ozawa
JOURNAL OF COMPUTER CHEMISTRY-JAPAN 16 (1), 28-31, 2017
82017
Mining of effective local order parameters to classify ice polymorphs
H Doi, KZ Takahashi, T Aoyagi
The Journal of Physical Chemistry A 125 (43), 9518-9526, 2021
72021
Searching for local order parameters to classify water structures at triple points
H Doi, KZ Takahashi, T Aoyagi
Journal of Computational Chemistry 42 (24), 1720-1727, 2021
72021
Formation mechanism of lipid membrane and vesicle using small angle X-ray scattering and dissipative particle dynamics (DPD) method
E Shinsho, K Okuwaki, H Doi, Y Mochizuki, T Furuishi, K Fukuzawa, ...
JOURNAL OF COMPUTER CHEMISTRY-JAPAN 17 (4), 172-179, 2018
72018
H 2 O 2 and glutamate imaging with improved sensitivity based on charge-transfer-type potentiometric redox sensor arrays
Y Okumura, T Iwata, K Okumura, H Shiguma, T Horio, H Doi, K Takahashi, ...
IMCS 2018 Conference, 141-142, 2018
52018
Replica exchange molecular simulation of Lennard–Jones particles in a two-dimensional confined system
K Yasuoka
AIP Advances 7 (5), 2017
52017
Machine learning to improve efficiency of non-empirical interaction parameter for dissipative particle dynamics (DPD) simulation
H Doi, S Matsuoka, K Okuwaki, R Hatada, S Minami, R Suhara, ...
Japanese Journal of Applied Physics 62 (7), 070901, 2023
42023
Regression analysis for predicting the elasticity of liquid crystal elastomers
H Doi, KZ Takahashi, H Yasuoka, J Fukuda, T Aoyagi
Scientific reports 12 (1), 19788, 2022
42022
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