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Giacomo Baruzzo
Giacomo Baruzzo
Research Fellow (RTDA), Department of Information Engineering, University of Padova
Verified email at unipd.it - Homepage
Title
Cited by
Cited by
Year
Simulation-based comprehensive benchmarking of RNA-seq aligners
G Baruzzo, KE Hayer, EJ Kim, B Di Camillo, GA FitzGerald, GR Grant
Nature methods 14 (2), 135-139, 2017
2902017
Single-cell RNA-sequencing: assessment of differential expression analysis methods
A Dal Molin, G Baruzzo, B Di Camillo
Frontiers in genetics 8, 62, 2017
1022017
A comparison of Illumina and Ion Torrent sequencing platforms in the context of differential gene expression
NF Lahens, E Ricciotti, O Smirnova, E Toorens, EJ Kim, G Baruzzo, ...
BMC genomics 18, 1-13, 2017
932017
Optimizing PCR primers targeting the bacterial 16S ribosomal RNA gene
F Sambo, F Finotello, E Lavezzo, G Baruzzo, G Masi, E Peta, M Falda, ...
BMC bioinformatics 19, 1-10, 2018
672018
SPARSim single cell: a count data simulator for scRNA-seq data
G Baruzzo, I Patuzzi, B Di Camillo
Bioinformatics 36 (5), 1468-1475, 2020
392020
Investigating differential abundance methods in microbiome data: A benchmark study
M Cappellato, G Baruzzo, B Di Camillo
PLOS Computational Biology 18 (9), e1010467, 2022
232022
metaSPARSim: a 16S rRNA gene sequencing count data simulator
I Patuzzi, G Baruzzo, C Losasso, A Ricci, B Di Camillo
BMC Bioinformatics 20 (9), 1-13, 2019
232019
Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics data
J Tanevski, T Nguyen, B Truong, N Karaiskos, ME Ahsen, X Zhang, C Shu, ...
Life science alliance 3 (11), 2020
202020
Identify, quantify and characterize cellular communication from single-cell RNA sequencing data with scSeqComm
G Baruzzo, G Cesaro, B Di Camillo
Bioinformatics 38 (7), 1920-1929, 2022
192022
Nilotinib interferes with cell cycle, ABC transporters and JAK-STAT signaling pathway in CD34+/lin-cells of patients with chronic phase chronic myeloid leukemia after 12 months …
A Trojani, E Pungolino, A Dal Molin, M Lodola, G Rossi, M D’Adda, ...
PloS one 14 (7), e0218444, 2019
132019
Modeling microbial community networks: methods and tools
M Cappellato, G Baruzzo, I Patuzzi, B Di Camillo
Current Genomics 22 (4), 267, 2021
82021
Beware to ignore the rare: how imputing zero-values can improve the quality of 16S rRNA gene studies results
G Baruzzo, I Patuzzi, B Di Camillo
BMC bioinformatics 22 (Suppl 15), 618, 2021
82021
Role of the Extracytoplasmic Function Sigma Factor SigE in the Stringent Response of Mycobacterium tuberculosis
G Baruzzo, A Serafini, F Finotello, T Sanavia, L Cioetto-Mazzabò, ...
Microbiology Spectrum 11 (2), e02944-22, 2023
52023
Nilotinib‐induced bone marrow CD34+/lin‐Ph+ cells early clearance in newly diagnosed CP‐Chronic Myeloid Leukemia: Final report of the PhilosoPhi34 study
E Pungolino, M D'adda, G De Canal, A Trojani, A Perego, C Elena, ...
European Journal of Haematology 107 (4), 436-448, 2021
32021
Progressive Down Regulation of JAK-STAT, Cell Cycle, and ABC Transporter Genes in CD34+/Lin-Cells of Chronic-Phase Chronic Myeloid Leukemia (CP-CML) Patients at Diagnosis Vs …
A Trojani, E Pungolino, G Rossi, M D'adda, LE Bossi, G Baruzzo, ...
Blood 134, 5034, 2019
32019
MAST: a hybrid Multi-Agent Spatio-Temporal model of tumor microenvironment informed using a data-driven approach
G Cesaro, M Milia, G Baruzzo, G Finco, F Morandini, A Lazzarini, P Alotto, ...
Bioinformatics Advances 2 (1), vbac092, 2022
22022
Results and lessons learned from the sbv IMPROVER metagenomics diagnostics for inflammatory bowel disease challenge
L Khachatryan, Y Xiang, A Ivanov, E Glaab, G Graham, I Granata, ...
Scientific Reports 13 (1), 6303, 2023
12023
ITSoneWB: profiling global taxonomic diversity of eukaryotic communities on Galaxy
MA Tangaro, G Defazio, B Fosso, VF Licciulli, G Grillo, G Donvito, ...
Bioinformatics 37 (22), 4253-4254, 2021
12021
Cellular population dynamics shape the route to human pluripotency
F Panariello, O Gagliano, C Luni, A Grimaldi, S Angiolillo, W Qin, ...
Nature Communications 14 (1), 2829, 2023
2023
IDENTIFICATION OF MIRNA AND TARGET GENES IN THE TRANSCRIPTOME ANALYSIS OF CD34+/LIN-CELLS OF PATIENTS WITH CHRONIC MYELOID LEUKEMIA IN THE CHRONIC PHASE AFTER 12 MONTHS OF …
A Trojani, E Pungolino, A Dal Molin, LE Bossi, G Rossi, M D'Adda, ...
HAEMATOLOGICA 104, 144-144, 2019
2019
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