|An integrated encyclopedia of DNA elements in the human genome|
ENCODE Project Consortium
Nature 489 (7414), 57-74, 2012
|ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia|
SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ...
Genome research 22 (9), 1813-1831, 2012
|Architecture of the human regulatory network derived from ENCODE data|
MB Gerstein, A Kundaje, M Hariharan, SG Landt, KK Yan, C Cheng, ...
Nature 489 (7414), 91-100, 2012
|A user's guide to the encyclopedia of DNA elements (ENCODE)|
RM Myers, J Stamatoyannopoulos, M Snyder, I Dunham, RC Hardison, ...
PLoS Biology 9 (4), e1001046, 2011
|A validated regulatory network for Th17 cell specification|
M Ciofani, A Madar, C Galan, ML Sellars, K Mace, F Pauli, A Agarwal, ...
Cell 151 (2), 289-303, 2012
|Dynamic DNA methylation across diverse human cell lines and tissues|
KE Varley, J Gertz, KM Bowling, SL Parker, TE Reddy, F Pauli-Behn, ...
Genome research 23 (3), 555-567, 2013
|Genomic determination of the glucocorticoid response reveals unexpected mechanisms of gene regulation|
TE Reddy, F Pauli, RO Sprouse, NF Neff, KM Newberry, MJ Garabedian, ...
Genome research 19 (12), 2163-2171, 2009
|Widespread plasticity in CTCF occupancy linked to DNA methylation|
H Wang, MT Maurano, H Qu, KE Varley, J Gertz, F Pauli, K Lee, ...
Genome research 22 (9), 1680-1688, 2012
|Analysis of DNA methylation in a three-generation family reveals widespread genetic influence on epigenetic regulation|
J Gertz, KE Varley, TE Reddy, KM Bowling, F Pauli, SL Parker, KS Kucera, ...
PLoS Genet 7 (8), e1002228, 2011
|Effects of sequence variation on differential allelic transcription factor occupancy and gene expression|
TE Reddy, J Gertz, F Pauli, KS Kucera, KE Varley, KM Newberry, ...
Genome research 22 (5), 860-869, 2012
|Chromosomal clustering and GATA transcriptional regulation of intestine-expressed genes in C. elegans|
F Pauli, Y Liu, YA Kim, PJ Chen, SK Kim
Development 133 (2), 287-295, 2006
|Role of CCCTC binding factor (CTCF) and cohesin in the generation of single-cell diversity of protocadherin-α gene expression|
K Monahan, ND Rudnick, PD Kehayova, F Pauli, KM Newberry, ...
Proceedings of the National Academy of Sciences 109 (23), 9125-9130, 2012
|Intricate interplay between astrocytes and motor neurons in ALS|
HP Phatnani, P Guarnieri, BA Friedman, MA Carrasco, M Muratet, ...
Proceedings of the National Academy of Sciences 110 (8), E756-E765, 2013
|A small family of LLS1-related non-heme oxygenases in plants with an origin amongst oxygenic photosynthesizers|
J Gray, E Wardzala, M Yang, S Reinbothe, S Haller, F Pauli
Plant molecular biology 54 (1), 39-54, 2004
|Evidence for multiple roles for grainyhead-like 2 in the establishment and maintenance of human mucociliary airway epithelium|
X Gao, CM Vockley, F Pauli, KM Newberry, Y Xue, SH Randell, TE Reddy, ...
Proceedings of the National Academy of Sciences 110 (23), 9356-9361, 2013
|Dynamic microRNA gene transcription and processing during T cell development|
FF Kirigin, K Lindstedt, M Sellars, M Ciofani, SL Low, L Jones, F Bell, ...
The Journal of Immunology 188 (7), 3257-3267, 2012
|Fully automated high-throughput chromatin immunoprecipitation for ChIP-seq: identifying ChIP-quality p300 monoclonal antibodies|
WC Gasper, GK Marinov, F Pauli-Behn, MT Scott, K Newberry, G DeSalvo, ...
Scientific reports 4, 5152, 2014
|SON and its alternatively spliced isoforms control MLL complex-mediated H3K4me3 and transcription of leukemia-associated genes|
JH Kim, MC Baddoo, EY Park, JK Stone, H Park, TW Butler, G Huang, ...
Molecular cell 61 (6), 859-873, 2016
|Allele-specific distribution of RNA polymerase II on female X chromosomes|
KS Kucera, TE Reddy, F Pauli, J Gertz, JE Logan, RM Myers, HF Willard
Human molecular genetics 20 (20), 3964-3973, 2011
|A toolbox of immunoprecipitation-grade monoclonal antibodies to human transcription factors|
A Venkataraman, K Yang, J Irizarry, M Mackiewicz, P Mita, Z Kuang, ...
Nature methods 15 (5), 330, 2018