|Parity and breastfeeding among African-American women: differential effects on breast cancer risk by estrogen receptor status in the Women’s Circle of Health Study|
CB Ambrosone, G Zirpoli, M Ruszczyk, J Shankar, CC Hong, D McIlwain, ...
Cancer Causes & Control 25 (2), 259-265, 2014
|Respiratory syncytial virus whole-genome sequencing identifies convergent evolution of sequence duplication in the C-terminus of the G gene|
SA Schobel, KM Stucker, ML Moore, LJ Anderson, EK Larkin, J Shankar, ...
Scientific reports 6 (1), 1-11, 2016
|Differences in the Nasopharyngeal Microbiome During Acute Respiratory Tract Infection With Human Rhinovirus and Respiratory Syncytial Virus in Infancy|
C Rosas-Salazar, MH Shilts, A Tovchigrechko, S Schobel, JD Chappell, ...
The Journal of Infectious Diseases 215 (12), 1924-1928, 2016
|Infant viral respiratory infection nasal immune-response patterns and their association with subsequent childhood recurrent wheeze|
KN Turi, J Shankar, LJ Anderson, D Rajan, K Gaston, T Gebretsadik, ...
American journal of respiratory and critical care medicine 198 (8), 1064-1073, 2018
|Using Bayesian modelling to investigate factors governing antibiotic-induced Candida albicans colonization of the GI tract|
J Shankar, NV Solis, S Mounaud, S Szpakowski, H Liu, L Losada, ...
Scientific reports 5 (1), 1-11, 2015
|Looking Beyond Respiratory Cultures: Microbiome‐Cytokine Signatures of Bacterial Pneumonia and Tracheobronchitis in Lung Transplant Recipients|
J Shankar, MH Nguyen, MM Crespo, EJ Kwak, SK Lucas, KJ McHugh, ...
American Journal of Transplantation 16 (6), 1766-1778, 2016
|A pharmacogenetic signature of high response to Copaxone in late-phase clinical-trial cohorts of multiple sclerosis|
CJ Ross, F Towfic, J Shankar, D Laifenfeld, M Thoma, M Davis, B Weiner, ...
Genome medicine 9 (1), 50, 2017
|A systematic evaluation of high-dimensional, ensemble-based regression for exploring large model spaces in microbiome analyses|
J Shankar, S Szpakowski, NV Solis, S Mounaud, H Liu, L Losada, ...
BMC bioinformatics 16 (1), 31, 2015
|HIV-exposure, early life feeding practices and delivery mode impacts on faecal bacterial profiles in a South African birth cohort|
S Claassen-Weitz, S Gardner-Lubbe, P Nicol, G Botha, S Mounaud, ...
Scientific reports 8 (1), 1-15, 2018
|Associations between estrogen receptor–negative breast cancer and timing of reproductive events differ between African American and European American women|
CB Ambrosone, GR Zirpoli, DH Bovbjerg, J Shankar, CC Hong, ...
Cancer Epidemiology and Prevention Biomarkers 23 (6), 1115-1120, 2014
|Insights into study design and statistical analyses in translational microbiome studies|
Annals of Translational Medicine 5 (12), 2017
|Strain level Streptococcus colonization patterns during the first year of life|
MS Wright, J McCorrison, AM Gomez, E Beck, D Harkins, J Shankar, ...
Frontiers in microbiology 8, 1661, 2017
|Genetic variants in the mTOR pathway and interaction with body size and weight gain on breast cancer risk in African-American and European American women|
TYD Cheng, J Shankar, G Zirpoli, MR Roberts, CC Hong, EV Bandera, ...
Cancer Causes & Control 27 (8), 965-976, 2016
|Association of a multi-SNP signature with response to Copaxone (glatiramer acetate) in a subset of patients and in multiple RRMS patient cohorts|
C Ross, F Towfic, J Shankar, D Laifenfeld, M Davis, M Thoma, B Zeskind, ...
European Committee for Treatment and Research in Multiple Sclerosis Congress …, 2016
|regeval: A systematic evaluation of high-dimensional, ensemble based regression for exploring large model spaces in microbiome analyses. GitHub. 2014|
|Interaction between genetic variants in mTOR and body size on breast cancer risk in African-American and European-American women|
TYD Cheng, J Shankar, G Zirpoli, S Yao, M Roberts, CC Hong, ...
Cancer Research 74 (19 Supplement), 3280-3280, 2014
|Metabolites in Newborns Are Correlated with Immune-Response to Acute Respiratory Syncytial Virus Infection and Are Associated with Subsequent Recurrent Wheeze|
KN Turi, KK Ryckman, J Shankar, LJ Anderson, T Gebretsadik, SR Das, ...
D92. GENETICS AND GENOMICS OF OBSTRUCTIVE LUNG DISEASE, A7366-A7366, 2018
|Respiratory Syncytial Virus (rsv) Genotypes Associated With Wheezing In Infants Have Distinct Nasopharyngeal Microbiome Community Structure During Acute Viral Infection|
M Shilts, S Schobel, A Tovchigrechko, C Rosas-Salazar, JD Chappell, ...
B21. ALTERATIONS IN MICROBIOME AND VIROME IN LUNG DISEASE, A2947-A2947, 2017
|Identification Of Two Novel Acute Respiratory Illness Cytokine-Response Subgroups Associated With Wheezing Phenotype|
KN Turi, J Shankar, LJ Anderson, K Gaston, D Rajan, T Gebretsadik, ...
A96. BEST OF PEDIATRICS, A2651-A2651, 2017
|Uncovering microbiome correlates of upper and lower respiratory tract infections in infants using sequential Bayesian analysis|
J Shankar, L Nillos, S Mounaud, E Segubre-Mercado, A Mojica, B Bacay, ...
ICML 2016 Workshop on Computational Biology, 2016