A cyclic peptide inhibitor of the SARS-CoV-2 main protease AG Kreutzer, M Krumberger, EM Diessner, CMT Parrocha, MA Morris, ... European journal of medicinal chemistry 221, 113530, 2021 | 40 | 2021 |
Sequence characterization and molecular modeling of clinically relevant variants of the SARS-CoV-2 main protease TJ Cross, GR Takahashi, EM Diessner, MG Crosby, V Farahmand, ... Biochemistry 59 (39), 3741-3756, 2020 | 35 | 2020 |
Mutation Effects on Structure and Dynamics: Adaptive Evolution of the SARS-CoV-2 Main Protease EM Diessner, GR Takahashi, TJ Cross, RW Martin, CT Butts Biochemistry, 2023 | 5 | 2023 |
Neural upscaling from residue-level protein structure networks to atomistic structures VT Duong, EM Diessner, G Grazioli, RW Martin, CT Butts Biomolecules 11 (12), 1788, 2021 | 5 | 2021 |
MT; Morris, MA; Guaglianone, G.; Butts, CT; Nowick, JS AG Kreutzer, M Krumberger, EM Diessner, C Parrocha Eur. J. Med. Chem 221, 113530, 2021 | 5 | 2021 |
Network Hamiltonian Models for Unstructured Protein Aggregates, with Application to γD-Crystallin EM Diessner, JA Freites, DJ Tobias, CT Butts The Journal of Physical Chemistry B, 2023 | 4 | 2023 |
Phase behavior of 1-ribbon and 2-ribbon fibril self-assembly in a simple network Hamiltonian model of protein fibrillization EM Diessner, LJ Thomas, CT Butts Biophysical Journal 122 (3), 206a, 2023 | 1 | 2023 |
Comparative Modeling and Analysis of Extremophilic D-Ala-D-Ala Carboxypeptidases EM Diessner, GR Takahashi, RW Martin, CT Butts Biomolecules 13 (2), 328, 2023 | 1 | 2023 |
Active Learning Module for Protein Structure Analysis Using Novel Enzymes JI Kelz, GR Takahashi, F Safizadeh, V Farahmand, MG Crosby, JL Uribe, ... The Biophysicist 3 (1), 49-63, 2022 | 1 | 2022 |
Comparative analysis of thermal adaptations of extremophilic prolyl oligopeptidases EM Diessner, GR Takahashi, CT Butts, RW Martin Biophysical Journal 123 (18), 3143-3162, 2024 | | 2024 |
Production of Distinct Fibrillar, Oligomeric, and Other Aggregation States from Network Models of Multibody Interaction EM Diessner, LJ Thomas, CT Butts Journal of Chemical Theory and Computation 20 (18), 7829-7840, 2024 | | 2024 |
Relating gD-crystallin WT and W42R monomer conformations to topological properties of their unstructured aggregates EM Diessner, JA Freites, DJ Tobias, CT Butts Biophysical Journal 123 (3), 488a, 2024 | | 2024 |
Comparative analysis of psychrophilic serine proteases EM Diessner, GR Takahashi, CT Butts, RW Martin Biophysical Journal 123 (3), 202a, 2024 | | 2024 |
Comparative dynamics and structural analysis of extremophilic serine proteases from diverse environments E Diessner, GR Takahashi, RW Martin, CT Butts Biophysical Journal 122 (3), 473a, 2023 | | 2023 |
Undergraduate research module for enzyme discovery using protein structure prediction JL Uribe, JI Kelz, GR Takahashi, F Safizadeh, V Farahmand, MG Crosby, ... Biophysical Journal 121 (3), 545a-546a, 2022 | | 2022 |
Dimethyl sulfoxide (DMSO) affects activity of SARS-CoV-2 main protease MG Crosby, GR Takahashi, RW Martin, E Diessner, B Norton-Baker, ... Biophysical Journal 121 (3), 192a, 2022 | | 2022 |
A year in the life of SARS-CoV-2 Mpro: molecular modeling and analysis of clinically observed Mpro variants from the first year of the COVID-19 pandemic EM Diessner, GR Takahashi, TJ Cross, CT Butts, RW Martin Biophysical Journal 121 (3), 38a, 2022 | | 2022 |
Reconstructing atomistic structures from residue-level protein structure networks using artificial neural networks G Grazioli, V Duong, E Diessner, RW Martin, CT Butts Biophysical Journal 121 (3), 133a, 2022 | | 2022 |
Molecular adaptations of psychrophilic serine proteases GR Takahashi, EM Diessner, OJ Akbari, J Le, CT Butts, RW Martin Biophysical Journal 121 (3), 47a, 2022 | | 2022 |
Course-based Undergraduate Research Module for Enzyme Discovery Using Protein Structure Prediction JI Kelz, GR Takahashi, F Safizadeh, V Farahmand, MG Crosby, JL Uribe, ... bioRxiv, 2021.08. 19.456875, 2021 | | 2021 |