| Protein cutoff scanning: A comparative analysis of cutoff dependent and cutoff free methods for prospecting contacts in proteins CH da Silveira, DEV Pires, RC Minardi, C Ribeiro, CJM Veloso, ... Proteins: Structure, Function, and Bioinformatics 74 (3), 727-743, 2009 | 81 | 2009 |
| Cutoff Scanning Matrix (CSM): structural classification and function prediction by protein inter-residue distance patterns DEV Pires, RC de Melo-Minardi, MA dos Santos, CH da Silveira, ... BMC genomics 12 (S4), S12, 2011 | 41 | 2011 |
| aCSM: noise-free graph-based signatures to large-scale receptor-based ligand prediction DEV Pires, RC de Melo-Minardi, CH Da Silveira, FF Campos, W Meira Jr Bioinformatics 29 (7), 855-861, 2013 | 33 | 2013 |
| Finding protein-protein interaction patterns by contact map matching. RC Melo, C Ribeiro, CS Murray, CJM Veloso, CH da Silveira, G Neshich, ... Embrapa Informática Agropecuária-Artigo em periódico indexado (ALICE), 2007 | 21 | 2007 |
| Hydropace: understanding and predicting cross-inhibition in serine proteases through hydrophobic patch centroids VM Gonçalves-Almeida, DEV Pires, RC de Melo-Minardi, CH da Silveira, ... Bioinformatics 28 (3), 342-349, 2012 | 18 | 2012 |
| A contact map matching approach to protein structure similarity analysis RC de Melo, CE Lopes, FA Fernandes Jr, CH da Silveira, MM Santoro, ... Genet Mol Res 5 (2), 284-308, 2006 | 16 | 2006 |
| Analysis of binding properties and specificity through identification of the interface forming residues (IFR) for serine proteases in silico docked to different inhibitors C Ribeiro, RC Togawa, IAP Neshich, I Mazoni, AL Mancini, ... BMC Structural Biology 10 (1), 36, 2010 | 11 | 2010 |
| On the characterization of energy networks of proteins CJ Veloso, CH Silveira, RC Melo, C Ribeiro, JC Lopes, MM Santoro, ... Genet Mol Res 6 (4), 799-820, 2007 | 10 | 2007 |
| Enzymap: Exploiting protein annotation for modeling and predicting ec number changes in uniprot/swiss-prot S de Azevedo Silveira, RC de Melo-Minardi, CH da Silveira, MM Santoro, ... PloS one 9 (2), e89162, 2014 | 8 | 2014 |
| ADVISe: Visualizing the dynamics of enzyme annotations in UniProt/Swiss-Prot SA Silveira, AO Rodrigues, RC de Melo-Minardi, CH da Silveira, W Meira 2012 IEEE Symposium on Biological Data Visualization (BioVis), 49-56, 2012 | 7 | 2012 |
| Molecular dynamics gives new insights into the glucose tolerance and inhibition mechanisms on β-glucosidases LSC Costa, DCB Mariano, REO Rocha, J Kraml, CH Silveira, KR Liedl, ... Molecules 24 (18), 3215, 2019 | 5 | 2019 |
| Gremlin: A graph mining strategy to infer protein-ligand interaction patterns CA Santana, FR Cerqueira, CH Da Silveira, AV Fassio, ... 2016 IEEE 16th International Conference on Bioinformatics and Bioengineering …, 2016 | 4 | 2016 |
| PDBest: a user–friendly platform for manipulating and enhancing protein structures WRS Goncalves, VM Gonçalves-Almeida, AL Arruda, W Meira Jr, ... Bioinformatics 31 (17), 2894-2896, 2015 | 4 | 2015 |
| An image-matching approach to protein similarity analysis F Fernandes, CER Lopes, RC de Melo, MM Santoro, RL Carceroni, ... Proceedings. 17th Brazilian Symposium on Computer Graphics and Image …, 2004 | 4 | 2004 |
| Pdbest: Pdb enhanced structures toolkit DEV Pires, CH Da Silveira, MM Santoro, W Meira In Proceedings of the 3rd International Conference of Brazilian Association …, 2007 | 3 | 2007 |
| Revealing protein-ligand interaction patterns through frequent subgraph mining SA Silveira, AV Fassio, CH da Silveira, RC de Melo-Minardi Proceedings of the International Conference on Bioinformatics …, 2015 | 2 | 2015 |
| EasyVS: a user friendly web based tool for molecule library selection and structure-based virtual screening DEV Pires, WNP Veloso, YC Myung, CHM Rodrigues, M Silk, ... Bioinformatics, 2020 | 1 | 2020 |
| An interactive strategy to visualize common subgraphs in protein-ligand interaction AV Fassio, CA Santana, FR Cerqueira, CH da Silveira, JPR Romanelli, ... International Conference on Bioinformatics and Biomedical Engineering, 383-394, 2018 | 1 | 2018 |
| How to compute protein residue contacts more accurately? PM Martins, VD Mayrink, S de A. Silveira, CH da Silveira, LHF de Lima, ... Proceedings of the 33rd Annual ACM Symposium on Applied Computing, 60-67, 2018 | 1 | 2018 |
| visGReMLIN: graph mining-based detection and visualization of conserved motifs at 3D protein-ligand interface at the atomic level VS Ribeiro, CA Santana, AV Fassio, FR Cerqueira, CH da Silveira, ... BMC bioinformatics 21 (2), 1-12, 2020 | | 2020 |
Raquel Cardoso de Melo-MinardiUniversidade Federal de Minas GeraisVerified email at dcc.ufmg.br
