| Protein flexibility predictions using graph theory DJ Jacobs, AJ Rader, LA Kuhn, MF Thorpe Proteins: Structure, Function, and Bioinformatics 44 (2), 150-165, 2001 | 802 | 2001 |
| Generic rigidity percolation: the pebble game DJ Jacobs, MF Thorpe Physical review letters 75 (22), 4051, 1995 | 511 | 1995 |
| An algorithm for two-dimensional rigidity percolation: the pebble game DJ Jacobs, B Hendrickson Journal of Computational Physics 137 (2), 346-365, 1997 | 409 | 1997 |
| Self-organization in network glasses MF Thorpe, DJ Jacobs, MV Chubynsky, JC Phillips Journal of Non-Crystalline Solids 266, 859-866, 2000 | 312 | 2000 |
| Principal component analysis: a method for determining the essential dynamics of proteins CC David, DJ Jacobs Protein dynamics, 193-226, 2014 | 304 | 2014 |
| Generic rigidity percolation in two dimensions DJ Jacobs, MF Thorpe Physical Review E 53 (4), 3682, 1996 | 227 | 1996 |
| Protein flexibility and dynamics using constraint theory MF Thorpe, M Lei, AJ Rader, DJ Jacobs, LA Kuhn Journal of Molecular Graphics and Modelling 19 (1), 60-69, 2001 | 151 | 2001 |
| Generic rigidity in three-dimensional bond-bending networks DJ Jacobs Journal of Physics A: Mathematical and General 31 (31), 6653, 1998 | 118 | 1998 |
| A flexible approach for understanding protein stability DR Livesay, S Dallakyan, GG Wood, DJ Jacobs FEBS letters 576 (3), 468-476, 2004 | 84 | 2004 |
| Floppy modes and the free energy: Rigidity and connectivity percolation on Bethe lattices PM Duxbury, DJ Jacobs, MF Thorpe, C Moukarzel Physical Review E 59 (2), 2084, 1999 | 82 | 1999 |
| Flexible and rigid regions in proteins DJ Jacobs, LA Kuhn, MF Thorpe Rigidity theory and applications, 357-384, 2002 | 79 | 2002 |
| Extending the fast multipole method to charges inside or outside a dielectric sphere W Cai, S Deng, D Jacobs Journal of Computational Physics 223 (2), 846-864, 2007 | 76 | 2007 |
| Network rigidity at finite temperature: relationships between thermodynamic stability, the nonadditivity of entropy, and cooperativity in molecular systems DJ Jacobs, S Dallakyan, GG Wood, A Heckathorne Physical Review E 68 (6), 061109, 2003 | 73 | 2003 |
| Structural rigidity in the capsid assembly of cowpea chlorotic mottle virus BM Hespenheide, DJ Jacobs, MF Thorpe Journal of Physics: Condensed Matter 16 (44), S5055, 2004 | 66 | 2004 |
| Anomalous diffusion: a dynamic perspective R Muralidhar, D Ramkrishna, H Nakanishi, D Jacobs Physica A: Statistical Mechanics and its Applications 167 (2), 539-559, 1990 | 66 | 1990 |
| Conserved quantitative stability/flexibility relationships (QSFR) in an orthologous RNase H pair DR Livesay, DJ Jacobs PROTEINS: Structure, Function, and Bioinformatics 62 (1), 130-143, 2006 | 63 | 2006 |
| Elucidating protein thermodynamics from the three-dimensional structure of the native state using network rigidity DJ Jacobs, S Dallakyan Biophysical journal 88 (2), 903-915, 2005 | 58 | 2005 |
| Generic rigidity of network glasses MF Thorpe, DJ Jacobs, NV Chubynsky, AJ Rader Rigidity theory and applications, 239-277, 2002 | 56 | 2002 |
| An image-based reaction field method for electrostatic interactions in molecular dynamics simulations of aqueous solutions Y Lin, A Baumketner, S Deng, Z Xu, D Jacobs, W Cai The Journal of chemical physics 131 (15), 10B608, 2009 | 55 | 2009 |
| New insight into long‐range nonadditivity within protein double‐mutant cycles AY Istomin, MM Gromiha, OK Vorov, DJ Jacobs, DR Livesay Proteins: Structure, Function, and Bioinformatics 70 (3), 915-924, 2008 | 52 | 2008 |
