| Assessing gene significance from cDNA microarray expression data via mixed models RD Wolfinger, G Gibson, ED Wolfinger, L Bennett, H Hamadeh, P Bushel, ... Journal of computational biology 8 (6), 625-637, 2001 | 1324 | 2001 |
| The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models MaQC Consortium Nature biotechnology 28 (8), 827, 2010 | 684 | 2010 |
| A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium Z Su, PP Łabaj, S Li, J Thierry-Mieg, D Thierry-Mieg, W Shi, C Wang, ... Nature biotechnology 32 (9), 903-914, 2014 | 563 | 2014 |
| Standardizing global gene expression analysis between laboratories and across platforms T Bammler, RP Beyer, S Bhattacharya, GA Boorman, A Boyles, ... Nature methods 2 (5), 1-6, 2005 | 530 | 2005 |
| Gene expression analysis reveals chemical-specific profiles HK Hamadeh, PR Bushel, S Jayadev, K Martin, O DiSorbo, S Sieber, ... Toxicological Sciences 67 (2), 219-231, 2002 | 497 | 2002 |
| The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance C Wang, B Gong, PR Bushel, J Thierry-Mieg, D Thierry-Mieg, J Xu, ... Nature biotechnology 32 (9), 926-932, 2014 | 341 | 2014 |
| Prediction of compound signature using high density gene expression profiling HK Hamadeh, PR Bushel, S Jayadev, O DiSorbo, L Bennett, L Li, ... Toxicological Sciences 67 (2), 232-240, 2002 | 311 | 2002 |
| A comparison of batch effect removal methods for enhancement of prediction performance using MAQC-II microarray gene expression data J Luo, M Schumacher, A Scherer, D Sanoudou, D Megherbi, T Davison, ... The pharmacogenomics journal 10 (4), 278-291, 2010 | 254 | 2010 |
| Statistical analysis of a gene expression microarray experiment with replication MK Kerr, CA Afshari, L Bennett, P Bushel, J Martinez, NJ Walker, ... Statistica Sinica, 203-217, 2002 | 253 | 2002 |
| Tamoxifen Functions As a Molecular Agonist Inducing Cell Cycle-Associated Genes in Breast Cancer Cells1 1 National Institute of Environmental Health Sciences (ES98263 and … LC Hodges, JD Cook, EK Lobenhofer, L Li, L Bennett, PR Bushel, ... Molecular Cancer Research 1 (4), 300-311, 2003 | 168 | 2003 |
| Global transcriptome and deletome profiles of yeast exposed to transition metals YH Jin, PE Dunlap, SJ McBride, H Al-Refai, PR Bushel, JH Freedman PLoS genetics 4 (4), e1000053, 2008 | 151 | 2008 |
| Development of gut microbiota in infants not exposed to medical interventions M Eggesbø, B Moen, S Peddada, D Baird, J Rugtveit, T Midtvedt, ... Apmis 119 (1), 17-35, 2011 | 143 | 2011 |
| Methapyrilene toxicity: anchorage of pathologic observations to gene expression alterations HK Hamadeh, BL Knight, AC Haugen, S Sieber, RP Amin, PR Bushel, ... Toxicologic Pathology 30 (4), 470-482, 2002 | 135 | 2002 |
| Database development in toxicogenomics: issues and efforts. WB Mattes, SD Pettit, SA Sansone, PR Bushel, MD Waters Environmental Health Perspectives 112 (4), 495-505, 2004 | 134 | 2004 |
| Blood gene expression signatures predict exposure levels PR Bushel, AN Heinloth, J Li, L Huang, JW Chou, GA Boorman, ... Proceedings of the National Academy of Sciences 104 (46), 18211-18216, 2007 | 133 | 2007 |
| CEBS—Chemical Effects in Biological Systems: a public data repository integrating study design and toxicity data with microarray and proteomics data M Waters, S Stasiewicz, B Alex Merrick, K Tomer, P Bushel, R Paules, ... Nucleic acids research 36 (suppl_1), D892-D900, 2007 | 130 | 2007 |
| The evolution of bioinformatics in toxicology: advancing toxicogenomics CA Afshari, HK Hamadeh, PR Bushel Toxicological Sciences 120 (suppl_1), S225-S237, 2011 | 126 | 2011 |
| Differential toxicogenomic responses to 2, 3, 7, 8-tetrachlorodibenzo-p-dioxin in malignant and nonmalignant human airway epithelial cells JM Martinez, CA Afshari, PR Bushel, A Masuda, T Takahashi, NJ Walker Toxicological Sciences 69 (2), 409-423, 2002 | 111 | 2002 |
| Negative regulation of the human epsilon-globin gene by transcriptional interference: role of an Alu repetitive element. J Wu, GJ Grindlay, P Bushel, L Mendelsohn, M Allan Molecular and cellular biology 10 (3), 1209-1216, 1990 | 110 | 1990 |
| Progress in the application of DNA microarrays. EK Lobenhofer, PR Bushel, CA Afshari, HK Hamadeh Environmental Health Perspectives 109 (9), 881-891, 2001 | 105 | 2001 |
