Johan Staaf
Johan Staaf
Department of Oncology, Clinical Sciences, Lund University, Sweden
Verified email at - Homepage
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Landscape of somatic mutations in 560 breast cancer whole-genome sequences
S Nik-Zainal, H Davies, J Staaf, M Ramakrishna, D Glodzik, X Zou, ...
Nature 534 (7605), 47, 2016
HRDetect is a predictor of BRCA1 and BRCA2 deficiency based on mutational signatures
H Davies, D Glodzik, S Morganella, LR Yates, J Staaf, X Zou, ...
Nature Medicine 23 (4), 517-525, 2017
Recurrent gross mutations of the PTEN tumor suppressor gene in breast cancers with deficient DSB repair
LH Saal, SK Gruvberger-Saal, C Persson, K Lövgren, M Jumppanen, ...
Nature genetics 40 (1), 102-107, 2008
GOBO: Gene expression-based Outcome for Breast cancer Online
M Ringnér, E Fredlund, J Häkkinen, Å Borg, J Staaf
PloS one 6 (3), e17911, 2011
Research article Molecular subtypes of breast cancer are associated with characteristic DNA methylation patterns
K Holm, C Hegardt, J Staaf, J Vallon-Christersson, G Jönsson, H Olsson, ...
MiRNA expression in urothelial carcinomas: important roles of miR‐10a, miR‐222, miR‐125b, miR‐7 and miR‐452 for tumor stage and metastasis, and frequent homozygous losses of miR‐31
S Veerla, D Lindgren, A Kvist, A Frigyesi, J Staaf, H Persson, F Liedberg, ...
International Journal of Cancer 124 (9), 2236-2242, 2009
Research article Genomic subtypes of breast cancer identified by array-comparative genomic hybridization display distinct molecular and clinical characteristics
G Jönsson, J Staaf, J Vallon-Christersson, M Ringnér, K Holm, C Hegardt, ...
Breast Cancer Research, 2010
High‐resolution genomic profiles of breast cancer cell lines assessed by tiling BAC array comparative genomic hybridization
G Jönsson, J Staaf, E Olsson, M Heidenblad, J Vallon‐Christersson, ...
Genes, Chromosomes and Cancer 46 (6), 543-558, 2007
Identification of new MicroRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene
H Persson, A Kvist, N Rego, J Staaf, J Vallon-Christersson, L Luts, ...
Cancer research 71 (1), 78-86, 2011
Identification of subtypes in human epidermal growth factor receptor 2–positive breast cancer reveals a gene signature prognostic of outcome
J Staaf, M Ringnér, J Vallon-Christersson, G Jönsson, PO Bendahl, ...
Journal of Clinical Oncology 28 (11), 1813-1820, 2010
Distinct genomic profiles in hereditary breast tumors identified by array-based comparative genomic hybridization
G Jönsson, TL Naylor, J Vallon-Christersson, J Staaf, J Huang, MR Ward, ...
Cancer research 65 (17), 7612-7621, 2005
The topography of mutational processes in breast cancer genomes
S Morganella, LB Alexandrov, D Glodzik, X Zou, H Davies, J Staaf, ...
Nature communications 7, 11383, 2016
Integrated Genomic and Gene Expression Profiling Identifies Two Major Genomic Circuits in Urothelial Carcinoma
D Lindgren, G Sjödahl, M Lauss, J Staaf, G Chebil, K Lövgren, ...
PLoS ONE 7 (6), e38863, 2012
High-resolution genomic and expression analyses of copy number alterations in HER2-amplified breast cancer
J Staaf, G Jönsson, M Ringnér, J Vallon-Christersson, D Grabau, ...
Breast Cancer Research 12 (3), R25, 2010
Segmentation-based detection of allelic imbalance and loss-of-heterozygosity in cancer cells using whole genome SNP arrays
J Staaf, D Lindgren, J Vallon-Christersson, A Isaksson, H Göransson, ...
Genome biology 9 (9), R136, 2008
Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios
J Staaf, J Vallon-Christersson, D Lindgren, G Juliusson, R Rosenquist, ...
BMC bioinformatics 9 (1), 409, 2008
Genomic profiling of malignant melanoma using tiling-resolution arrayCGH
G Jönsson, C Dahl, J Staaf, T Sandberg, PO Bendahl, M Ringnér, ...
Oncogene 26 (32), 4738-4748, 2007
Screening for copy‐number alterations and loss of heterozygosity in chronic lymphocytic leukemia—A comparative study of four differently designed, high resolution microarray …
R Gunnarsson, J Staaf, M Jansson, AM Ottesen, H Göransson, U Liljedahl, ...
Genes, Chromosomes and Cancer 47 (8), 697-711, 2008
Two genetic pathways, t (1; 10) and amplification of 3p11–12, in myxoinflammatory fibroblastic sarcoma, haemosiderotic fibrolipomatous tumour, and morphologically similar lesions
KH Hallor, R Sciot, J Staaf, M Heidenblad, A Rydholm, HCF Bauer, ...
The Journal of pathology 217 (5), 716-727, 2009
Recurrent 10q22-q23 deletions: a genomic disorder on 10q associated with cognitive and behavioral abnormalities
J Balciuniene, N Feng, K Iyadurai, B Hirsch, L Charnas, BR Bill, ...
The American Journal of Human Genetics 80 (5), 938-947, 2007
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