simon hubbard

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	All	Since 2016
Citations	12611	2889
h-index	49	25
i10-index	94	52

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Co-authors

S.G. OliverUniversity of CambridgeVerified email at cam.ac.uk
Robert Beynonuniversity of liverpoolVerified email at liv.ac.uk
Chris GrantProfessor of Biochemistry, University of ManchesterVerified email at manchester.ac.uk
Norman W. PatonProfessor of Computer Science, University of ManchesterVerified email at cs.man.ac.uk
Mark AsheThe University of ManchesterVerified email at manchester.ac.uk
Janet M ThorntonSenior Scientist, European Molecular Biology Laboratory - European Institute of Bioinformatics (EMBL-EBI)Verified email at ebi.ac.uk
Andrew JonesUniversity of LiverpoolVerified email at liverpool.ac.uk
Craig LawlessUniversity of ManchesterVerified email at manchester.ac.uk
Graham Pavitt (GD Pavitt)Faculty of Biology Medicine and Health, University of ManchesterVerified email at manchester.ac.uk
Julian SelleyUniversity of ManchesterVerified email at manchester.ac.uk
Henning HermjakobHead of Molecular Systems, European Bioinformatics Institute (EMBL-EBI)Verified email at ebi.ac.uk
Claire E. EyersProfessor, Institute of Integrative Biology, University of LiverpoolVerified email at liverpool.ac.uk
Stephen HolmanAssociate Principal Scientist, AstraZenecaVerified email at astrazeneca.com
Lydia Castelliuniversity of manchesterVerified email at manchester.ac.uk
Nick TalbotThe Sainsbury LaboratoryVerified email at tsl.ac.uk
Christopher KershawThe University of ManchesterVerified email at manchester.ac.uk
kathryn lilleyProfessor of Cellular DynamicsVerified email at cam.ac.uk
andy brassProfessor of Bioinformatics, School of Health Sciences, University of ManchesterVerified email at manchester.ac.uk
Magnus RattrayUniversity of ManchesterVerified email at manchester.ac.uk
Cornelia HedelerData Architect, NICEVerified email at nice.org.uk

simon hubbard

Professor of Computational Biology, University of Manchester

Verified email at manchester.ac.uk

Proteomics computational biology control of gene expression


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Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution LDW Hillier, W Miller, E Birney, W Warren, RC Hardison, CP Ponting, ... Nature 432 (7018), 695-716, 2004	2394	2004
Naccess SJ Hubbard, JM Thornton Computer Program, Department of Biochemistry and Molecular Biology …, 1993	2204*	1993
A genetic variation map for chicken with 2.8 million single nucleotide polymorphisms International Chicken Polymorphism Map Consortium Nature 432 (7018), 717, 2004	537	2004
The structural aspects of limited proteolysis of native proteins SJ Hubbard Biochimica et biophysica acta 1382 (2), 191-206, 1998	479	1998
Molecular recognition: conformational analysis of limited proteolytic sites and serine proteinase protein inhibitors SJ Hubbard, SF Campbell, JM Thornton Journal of molecular biology 220 (2), 507-530, 1991	414	1991
Global translational responses to oxidative stress impact upon multiple levels of protein synthesis D Shenton, JB Smirnova, JN Selley, K Carroll, SJ Hubbard, GD Pavitt, ... Journal of Biological Chemistry 281 (39), 29011-29021, 2006	371	2006
A comprehensive collection of chicken cDNAs PE Boardman, J Sanz-Ezquerro, IM Overton, DW Burt, E Bosch, WT Fong, ... Current biology 12 (22), 1965-1969, 2002	371	2002
A systematic approach to modeling, capturing, and disseminating proteomics experimental data CF Taylor, NW Paton, KL Garwood, PD Kirby, DA Stead, Z Yin, ... Nature biotechnology 21 (3), 247-254, 2003	295	2003
Modeling studies of the change in conformation required for cleavage of limited proteolytic sites SJ Hubbard, F Eisenmenger, JM Thornton Protein Science 3 (5), 757-768, 1994	266	1994
Intramolecular cavities in globular proteins SJ Hubbard, KH Gross, P Argos Protein Engineering, Design and Selection 7 (5), 613-626, 1994	216	1994
The chicken as a model for large-scale analysis of vertebrate gene function WRA Brown, SJ Hubbard, C Tickle, SA Wilson Nature Reviews Genetics 4 (2), 87-98, 2003	196	2003
The mzIdentML data standard for mass spectrometry-based proteomics results AR Jones, M Eisenacher, G Mayer, O Kohlbacher, J Siepen, SJ Hubbard, ... Molecular & Cellular Proteomics 11 (7), M111. 014381-1-M111. 014381-10, 2012	183	2012
Comparative genome analysis of filamentous fungi reveals gene family expansions associated with fungal pathogenesis DM Soanes, I Alam, M Cornell, HM Wong, C Hedeler, NW Paton, ... PLoS One 3 (6), e2300, 2008	180	2008
Prediction of missed cleavage sites in tryptic peptides aids protein identification in proteomics JA Siepen, EJ Keevil, D Knight, SJ Hubbard Journal of proteome research 6 (1), 399-408, 2007	171	2007
Differential expression of ion channel transcripts in atrial muscle and sinoatrial node in rabbit JO Tellez, H Dobrzynski, ID Greener, GM Graham, E Laing, H Honjo, ... Circulation research 99 (12), 1384-1393, 2006	170	2006
Cavities and packing at protein interfaces SJ Hubbard, P Argos Protein Science 3 (12), 2194-2206, 1994	169	1994
BioMart Central Portal: an open database network for the biological community JM Guberman, J Ai, O Arnaiz, J Baran, A Blake, R Baldock, C Chelala, ... Database 2011, 2011	154	2011
Conceptual modelling of genomic information NW Paton, SA Khan, A Hayes, F Moussouni, A Brass, K Eilbeck, ... Bioinformatics 16 (6), 548-557, 2000	142	2000
Assessment of conformational parameters as predictors of limited proteolytic sites in native protein structures. SJ Hubbard, RJ Beynon, JM Thornton Protein engineering 11 (5), 349-359, 1998	137	1998
The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics AR Jones, M Miller, R Aebersold, R Apweiler, CA Ball, A Brazma, ... Nature biotechnology 25 (10), 1127-1133, 2007	130	2007

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