Andreas S. Richter
Andreas S. Richter
Genedata AG
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Cited by
Cited by
deepTools2: a next generation web server for deep-sequencing data analysis
F Ramírez, DP Ryan, B Grüning, V Bhardwaj, F Kilpert, AS Richter, ...
Nucleic acids research 44 (Web Server issue), W160, 2016
IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions
A Busch, AS Richter, R Backofen
Bioinformatics 24 (24), 2849-2856, 2008
The International Human Epigenome Consortium: a blueprint for scientific collaboration and discovery
HG Stunnenberg, S Abrignani, D Adams, M de Almeida, L Altucci, V Amin, ...
Cell 167 (5), 1145-1149, 2016
CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains
PR Wright, J Georg, M Mann, DA Sorescu, AS Richter, S Lott, R Kleinkauf, ...
Nucleic acids research 42 (W1), W119-W123, 2014
Comparative genomics boosts target prediction for bacterial small RNAs
PR Wright, AS Richter, K Papenfort, M Mann, J Vogel, WR Hess, ...
Proceedings of the National Academy of Sciences 110 (37), E3487-E3496, 2013
Freiburg RNA Tools: a web server integrating IntaRNA, ExpaRNA and LocARNA
C Smith, S Heyne, AS Richter, S Will, R Backofen
Nucleic acids research 38 (suppl_2), W373-W377, 2010
Epigenomic profiling of human CD4+ T cells supports a linear differentiation model and highlights molecular regulators of memory development
P Durek, K Nordström, G Gasparoni, A Salhab, C Kressler, M De Almeida, ...
Immunity 45 (5), 1148-1161, 2016
The small RNA PhrS stimulates synthesis of the Pseudomonas aeruginosa quinolone signal
E Sonnleitner, N Gonzalez, T Sorger‐Domenigg, S Heeb, AS Richter, ...
Molecular microbiology 80 (4), 868-885, 2011
Freiburg RNA tools: a central online resource for RNA-focused research and teaching
M Raden, SM Ali, OS Alkhnbashi, A Busch, F Costa, JA Davis, ...
Nucleic acids research 46 (W1), W25-W29, 2018
snakePipes: facilitating flexible, scalable and integrative epigenomic analysis
V Bhardwaj, S Heyne, K Sikora, L Rabbani, M Rauer, F Kilpert, AS Richter, ...
Bioinformatics 35 (22), 4757-4759, 2019
Standardizing chromatin research: a simple and universal method for ChIP-seq
L Arrigoni, AS Richter, E Betancourt, K Bruder, S Diehl, T Manke, ...
Nucleic acids research 44 (7), e67-e67, 2016
Epigenetic dynamics of monocyte-to-macrophage differentiation
S Wallner, C Schröder, E Leitão, T Berulava, C Haak, D Beißer, ...
Epigenetics & chromatin 9, 1-17, 2016
Accessibility and conservation: general features of bacterial small RNA–mRNA interactions?
A Richter, R Backofen
RNA biology 9 (7), 954-965, 2012
An archaeal sRNA targeting cis - and trans -encoded mRNAs via two distinct domains
D Jäger, SR Pernitzsch, AS Richter, R Backofen, CM Sharma, RA Schmitz
Nucleic acids research 40 (21), 10964-10979, 2012
Seed-based IntaRNA prediction combined with GFP-reporter system identifies mRNA targets of the small RNA Yfr1
AS Richter, C Schleberger, R Backofen, C Steglich
Bioinformatics 26 (1), 1-5, 2010
PETcofold: predicting conserved interactions and structures of two multiple alignments of RNA sequences
SE Seemann, AS Richter, T Gesell, R Backofen, J Gorodkin
Bioinformatics 27 (2), 211-219, 2011
Forward genetic screens in zebrafish identify pre-mRNA-processing pathways regulating early T cell development
N Iwanami, K Sikora, AS Richter, M Mönnich, L Guerri, C Soza-Ried, ...
Cell reports 17 (9), 2259-2270, 2016
Cell type specific gene expression analysis of prostate needle biopsies resolves tumor tissue heterogeneity
M Krönig, M Walter, V Drendel, M Werner, CA Jilg, AS Richter, ...
Oncotarget 6 (2), 1302, 2015
Hierarchical folding of multiple sequence alignments for the prediction of structures and RNA-RNA interactions
SE Seemann, AS Richter, J Gorodkin, R Backofen
Algorithms for Molecular Biology 5, 1-13, 2010
Bioinformatics of prokaryotic RNAs
R Backofen, F Amman, F Costa, S Findeiß, AS Richter, PF Stadler
RNA biology 11 (5), 470-483, 2014
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