John A. Bachman
John A. Bachman
Fellow in Therapeutic Sciences, Harvard Medical School
Email verificata su fas.harvard.edu - Home page
TitoloCitata daAnno
BID preferentially activates BAK while BIM preferentially activates BAX, affecting chemotherapy response
KA Sarosiek, X Chi, JA Bachman, JJ Sims, J Montero, L Patel, A Flanagan, ...
Molecular cell 51 (6), 751-765, 2013
1552013
Programming biological models in Python using PySB
CF Lopez, JL Muhlich, JA Bachman, PK Sorger
Molecular systems biology 9 (1), 2013
1252013
Fundamental trade-offs between information flow in single cells and cellular populations
R Suderman, JA Bachman, A Smith, PK Sorger, EJ Deeds
Proceedings of the National Academy of Sciences 114 (22), 5755-5760, 2017
422017
From word models to executable models of signaling networks using automated assembly
BM Gyori, JA Bachman, K Subramanian, JL Muhlich, L Galescu, ...
Molecular systems biology 13 (11), 2017
392017
New approaches to modeling complex biochemistry
JA Bachman, P Sorger
Nature methods 8 (2), 130, 2011
392011
Optimizing ring assembly reveals the strength of weak interactions
EJ Deeds, JA Bachman, W Fontana
Proceedings of the National Academy of Sciences 109 (7), 2348-2353, 2012
302012
FamPlex: a resource for entity recognition and relationship resolution of human protein families and complexes in biomedical text mining
JA Bachman, BM Gyori, PK Sorger
BMC bioinformatics 19 (1), 248, 2018
72018
INDRA-IPM: interactive pathway modeling using natural language with automated assembly
PV Todorov, BM Gyori, JA Bachman, PK Sorger
Bioinformatics, 2019
32019
Eidos, INDRA, & Delphi: From free text to executable causal models
R Sharp, A Pyarelal, B Gyori, K Alcock, E Laparra, ...
Proceedings of the 2019 Conference of the North American Chapter of the …, 2019
22019
Re-curation and rational enrichment of knowledge graphs in Biological Expression Language
CT Hoyt, D Domingo-Fernández, R Aldisi, L Xu, K Kolpeja, S Spalek, ...
Database 2019, 2019
12019
Measuring and modeling life-death decisions in single cells
PK Sorger, C Lopez, D Flusberg, H Eydgahi, J Bachman, J Sims, W Chen, ...
The FASEB Journal 26 (1_supplement), 228.1-228.1, 2012
12012
The Noise is the Signal: Information Flow in Single Cells and Cellular Populations
R Suderman, J Bachman, A Smith, P Sorger, EJ Deeds
10th Annual q-bio Conference, Nashville, TN, 0
1
Synthetic Lethal Interaction of SHOC2 Depletion with MEK Inhibition in RAS-Driven Cancers
R Sulahian, JJ Kwon, KH Walsh, E Pailler, TL Bosse, M Thaker, ...
Cell Reports 29 (1), 118-134. e8, 2019
2019
Understanding the Polarity of Events in the Biomedical Literature: Deep Learning vs. Linguistically-informed Methods
E Noriega-Atala, Z Liang, J Bachman, C Morrison, M Surdeanu
Proceedings of the Workshop on Extracting Structured Knowledge from …, 2019
2019
Assembling a phosphoproteomic knowledge base using ProtMapper to normalize phosphosite information from databases and text mining
JA Bachman, BM Gyori, PK Sorger
bioRxiv, 822668, 2019
2019
Assembling a corpus of phosphoproteomic annotations using ProtMapper to normalize site information from databases and text mining
JA Bachman, BM Gyori, PK Sorger
bioRxiv, 822668, 2019
2019
GeneWalk identifies relevant gene functions for a biological context using network representation learning
R Ietswaart, BM Gyori, JA Bachman, PK Sorger, LS Churchman
bioRxiv, 755579, 2019
2019
INDRA Documentation
BM Gyori, JA Bachman
2017
Identifying Mechanisms of Apoptotic Pore Formation With Programmatic Ensemble Modeling
J Bachman
2016
BAX and BAK are preferentially activated by BIM and BID, respectively, affecting clinical chemotherapy response.
KA Sarosiek, J Bachman, J Montero, L Patel, JJ Sims, X Chi, DW Andrews, ...
Cancer Research 73 (8 Supplement), 1713-1713, 2013
2013
Il sistema al momento non può eseguire l'operazione. Riprova più tardi.
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