John A. Bachman
John A. Bachman
Fellow in Therapeutic Sciences, Harvard Medical School
Email verificata su - Home page
Citata da
Citata da
BID preferentially activates BAK while BIM preferentially activates BAX, affecting chemotherapy response
KA Sarosiek, X Chi, JA Bachman, JJ Sims, J Montero, L Patel, A Flanagan, ...
Molecular cell 51 (6), 751-765, 2013
Programming biological models in Python using PySB
CF Lopez, JL Muhlich, JA Bachman, PK Sorger
Molecular systems biology 9 (1), 2013
Fundamental trade-offs between information flow in single cells and cellular populations
R Suderman, JA Bachman, A Smith, PK Sorger, EJ Deeds
Proceedings of the National Academy of Sciences 114 (22), 5755-5760, 2017
From word models to executable models of signaling networks using automated assembly
BM Gyori, JA Bachman, K Subramanian, JL Muhlich, L Galescu, ...
Molecular systems biology 13 (11), 2017
New approaches to modeling complex biochemistry
JA Bachman, P Sorger
Nature methods 8 (2), 130-131, 2011
Optimizing ring assembly reveals the strength of weak interactions
EJ Deeds, JA Bachman, W Fontana
Proceedings of the National Academy of Sciences 109 (7), 2348-2353, 2012
FamPlex: a resource for entity recognition and relationship resolution of human protein families and complexes in biomedical text mining
JA Bachman, BM Gyori, PK Sorger
BMC bioinformatics 19 (1), 248, 2018
INDRA-IPM: interactive pathway modeling using natural language with automated assembly
PV Todorov, BM Gyori, JA Bachman, PK Sorger
Bioinformatics 35 (21), 4501-4503, 2019
Eidos, INDRA, & Delphi: From free text to executable causal models
R Sharp, A Pyarelal, B Gyori, K Alcock, E Laparra, ...
Proceedings of the 2019 Conference of the North American Chapter of the …, 2019
Synthetic Lethal Interaction of SHOC2 Depletion with MEK Inhibition in RAS-Driven Cancers
R Sulahian, JJ Kwon, KH Walsh, E Pailler, TL Bosse, M Thaker, ...
Cell reports 29 (1), 118-134. e8, 2019
GeneWalk identifies relevant gene functions for a biological context using network representation learning
R Ietswaart, BM Gyori, JA Bachman, PK Sorger, LS Churchman
bioRxiv, 755579, 2019
Re-curation and rational enrichment of knowledge graphs in Biological Expression Language
CT Hoyt, D Domingo-Fernández, R Aldisi, L Xu, K Kolpeja, S Spalek, ...
Database 2019, 2019
Measuring and modeling life-death decisions in single cells
PK Sorger, C Lopez, D Flusberg, H Eydgahi, J Bachman, J Sims, W Chen, ...
The FASEB Journal 26 (1_supplement), 228.1-228.1, 2012
The Noise is the Signal: Information Flow in Single Cells and Cellular Populations
R Suderman, J Bachman, A Smith, P Sorger, EJ Deeds
10th Annual q-bio Conference, Nashville, TN, 0
Exploring the understudied human kinome for research and therapeutic opportunities
N Moret, C Liu, BM Gyori, JA Bachman, A Steppi, R Taujale, LC Huang, ...
bioRxiv, 2020
Adeft: Acromine-based Disambiguation of Entities from Text with applications to the biomedical literature
A Steppi, BM Gyori, JA Bachman
Journal of open source software 5 (45), 2020
Understanding the Polarity of Events in the Biomedical Literature: Deep Learning vs. Linguistically-informed Methods
E Noriega-Atala, Z Liang, J Bachman, C Morrison, M Surdeanu
Proceedings of the Workshop on Extracting Structured Knowledge from …, 2019
Assembling a phosphoproteomic knowledge base using ProtMapper to normalize phosphosite information from databases and text mining
JA Bachman, BM Gyori, PK Sorger
BioRxiv, 822668, 2019
Assembling a corpus of phosphoproteomic annotations using ProtMapper to normalize site information from databases and text mining
JA Bachman, BM Gyori, PK Sorger
bioRxiv, 822668, 2019
INDRA Documentation
BM Gyori, JA Bachman
Il sistema al momento non può eseguire l'operazione. Riprova più tardi.
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