John A. Bachman
John A. Bachman
Fellow in Therapeutic Sciences, Harvard Medical School
Email verificata su - Home page
TitoloCitata daAnno
BID preferentially activates BAK while BIM preferentially activates BAX, affecting chemotherapy response
KA Sarosiek, X Chi, JA Bachman, JJ Sims, J Montero, L Patel, A Flanagan, ...
Molecular cell 51 (6), 751-765, 2013
Programming biological models in Python using PySB
CF Lopez, JL Muhlich, JA Bachman, PK Sorger
Molecular systems biology 9 (1), 2013
Fundamental trade-offs between information flow in single cells and cellular populations
R Suderman, JA Bachman, A Smith, PK Sorger, EJ Deeds
Proceedings of the National Academy of Sciences 114 (22), 5755-5760, 2017
From word models to executable models of signaling networks using automated assembly
BM Gyori, JA Bachman, K Subramanian, JL Muhlich, L Galescu, ...
Molecular systems biology 13 (11), 2017
New approaches to modeling complex biochemistry
JA Bachman, P Sorger
Nature methods 8 (2), 130, 2011
Optimizing ring assembly reveals the strength of weak interactions
EJ Deeds, JA Bachman, W Fontana
Proceedings of the National Academy of Sciences 109 (7), 2348-2353, 2012
FamPlex: a resource for entity recognition and relationship resolution of human protein families and complexes in biomedical text mining
JA Bachman, BM Gyori, PK Sorger
BMC bioinformatics 19 (1), 248, 2018
INDRA-IPM: interactive pathway modeling using natural language with automated assembly
PV Todorov, BM Gyori, JA Bachman, PK Sorger
Bioinformatics, 2019
Eidos, INDRA, & Delphi: From free text to executable causal models
R Sharp, A Pyarelal, B Gyori, K Alcock, E Laparra, ...
Proceedings of the 2019 Conference of the North American Chapter of the …, 2019
Re-curation and rational enrichment of knowledge graphs in Biological Expression Language
CT Hoyt, D Domingo-Fernández, R Aldisi, L Xu, K Kolpeja, S Spalek, ...
Database 2019, 2019
Measuring and modeling life-death decisions in single cells
PK Sorger, C Lopez, D Flusberg, H Eydgahi, J Bachman, J Sims, W Chen, ...
The FASEB Journal 26 (1_supplement), 228.1-228.1, 2012
The Noise is the Signal: Information Flow in Single Cells and Cellular Populations
R Suderman, J Bachman, A Smith, P Sorger, EJ Deeds
10th Annual q-bio Conference, Nashville, TN, 0
Synthetic Lethal Interaction of SHOC2 Depletion with MEK Inhibition in RAS-Driven Cancers
R Sulahian, JJ Kwon, KH Walsh, E Pailler, TL Bosse, M Thaker, ...
Cell Reports 29 (1), 118-134. e8, 2019
Understanding the Polarity of Events in the Biomedical Literature: Deep Learning vs. Linguistically-informed Methods
E Noriega-Atala, Z Liang, J Bachman, C Morrison, M Surdeanu
Proceedings of the Workshop on Extracting Structured Knowledge from …, 2019
Assembling a phosphoproteomic knowledge base using ProtMapper to normalize phosphosite information from databases and text mining
JA Bachman, BM Gyori, PK Sorger
bioRxiv, 822668, 2019
Assembling a corpus of phosphoproteomic annotations using ProtMapper to normalize site information from databases and text mining
JA Bachman, BM Gyori, PK Sorger
bioRxiv, 822668, 2019
GeneWalk identifies relevant gene functions for a biological context using network representation learning
R Ietswaart, BM Gyori, JA Bachman, PK Sorger, LS Churchman
bioRxiv, 755579, 2019
INDRA Documentation
BM Gyori, JA Bachman
Identifying Mechanisms of Apoptotic Pore Formation With Programmatic Ensemble Modeling
J Bachman
BAX and BAK are preferentially activated by BIM and BID, respectively, affecting clinical chemotherapy response.
KA Sarosiek, J Bachman, J Montero, L Patel, JJ Sims, X Chi, DW Andrews, ...
Cancer Research 73 (8 Supplement), 1713-1713, 2013
Il sistema al momento non può eseguire l'operazione. Riprova più tardi.
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