| The Mycobacterium tuberculosis regulatory network and hypoxia JE Galagan, K Minch, M Peterson, A Lyubetskaya, E Azizi, L Sweet, ... Nature 499 (7457), 178-183, 2013 | 466 | 2013 |
| Comparative analysis of mycobacterium and related actinomycetes yields insight into the evolution of mycobacterium tuberculosis pathogenesis AM McGuire, B Weiner, ST Park, I Wapinski, S Raman, G Dolganov, ... BMC genomics 13, 1-27, 2012 | 112 | 2012 |
| Genome-Wide Characterization of Light-Regulated Genes in Neurospora crassa C Wu, F Yang, KM Smith, M Peterson, R Dekhang, Y Zhang, J Zucker, ... G3: Genes, Genomes, Genetics 4 (9), 1731-1745, 2014 | 99 | 2014 |
| Comprehensive Definition of the SigH Regulon of Mycobacterium tuberculosis Reveals Transcriptional Control of Diverse Stress Responses JD Sharp, AK Singh, ST Park, A Lyubetskaya, MW Peterson, ALC Gomes, ... PLoS One 11 (3), e0152145, 2016 | 49 | 2016 |
| The Neurospora Transcription Factor ADV-1 Transduces Light Signals and Temporal Information to Control Rhythmic Expression of Genes Involved in Cell Fusion R Dekhang, C Wu, KM Smith, TM Lamb, M Peterson, EL Bredeweg, ... G3: Genes, Genomes, Genetics 7 (1), 129-142, 2017 | 42 | 2017 |
| Protein–protein docking: overview and performance analysis K Wiehe, MW Peterson, B Pierce, J Mintseris, Z Weng Protein Structure Prediction, 283-314, 2008 | 36 | 2008 |
| VX hydrolysis by human serum paraoxonase 1: a comparison of experimental and computational results MW Peterson, SZ Fairchild, TC Otto, M Mohtashemi, DM Cerasoli, ... PLoS One 6 (5), e20335, 2011 | 35 | 2011 |
| Role of intragenic binding of cAMP responsive protein (CRP) in regulation of the succinate dehydrogenase genes Rv0249c-Rv0247c in TB complex mycobacteria GS Knapp, A Lyubetskaya, MW Peterson, ALC Gomes, Z Ma, JE Galagan, ... Nucleic Acids Research 43 (11), 5377-5393, 2015 | 33 | 2015 |
| Characterization of a cAMP responsive transcription factor, Cmr (Rv1675c), in TB complex mycobacteria reveals overlap with the DosR (DevR) dormancy regulon S Ranganathan, G Bai, A Lyubetskaya, GS Knapp, MW Peterson, ... Nucleic Acids Research 44 (1), 134-151, 2016 | 30 | 2016 |
| Decoding ChIP-seq with a double-binding signal refines binding peaks to single-nucleotides and predicts cooperative interaction ALC Gomes, T Abeel, M Peterson, E Azizi, A Lyubetskaya, L Carvalho, ... Genome research 24 (10), 1686-1697, 2014 | 27 | 2014 |
| Transcription factor binding site mapping using ChIP‐Seq S Jaini, A Lyubetskaya, A Gomes, M Peterson, ST Park, S Raman, ... Molecular Genetics of Mycobacteria, 161-181, 2014 | 26 | 2014 |
| Computational characterization of how the VX nerve agent binds human serum paraoxonase 1 SZ Fairchild, MW Peterson, A Hamza, CG Zhan, DM Cerasoli, WE Chang Journal of molecular modeling 17, 97-109, 2011 | 25 | 2011 |
| Nephele: genotyping via complete composition vectors and MapReduce ME Colosimo, MW Peterson, S Mardis, L Hirschman Source code for biology and medicine 6, 1-10, 2011 | 23 | 2011 |
| TreeViewJ: An application for viewing and analyzing phylogenetic trees MW Peterson, ME Colosimo Source Code for Biology and Medicine 2, 1-4, 2007 | 14 | 2007 |
| Co-design in synthetic biology: a system-level analysis of the development of an environmental sensing device DA Ball, MW Lux, RR Graef, MW Peterson, JD Valenti, J Dileo, J Peccoud Biocomputing 2010, 385-396, 2010 | 7 | 2010 |
| Hallmarks of Human-Machine Collaboration: A framework for assessment in the DARPA communicating with Computers Program R Kozierok, J Aberdeen, C Clark, C Garay, B Goodman, T Korves, ... arXiv preprint arXiv:2102.04958, 2021 | 6 | 2021 |
| Open-target sparse sensing of biological agents using DNA microarray M Mohtashemi, DK Walburger, MW Peterson, FN Sutton, HB Skaer, ... BMC bioinformatics 12, 1-11, 2011 | 6 | 2011 |
| Assessing open-ended human-computer collaboration systems: applying a hallmarks approach R Kozierok, J Aberdeen, C Clark, C Garay, B Goodman, T Korves, ... Frontiers in artificial intelligence 4, 670009, 2021 | 5 | 2021 |
| Pathogen metadata platform: software for accessing and analyzing pathogen strain information WE Chang, MW Peterson, CD Garay, T Korves BMC bioinformatics 17, 1-6, 2016 | 5 | 2016 |
| Transcription factor binding site mapping using ChIPSeq. Microbiol Spectr 2: doi: 10.1128/microbiolspec S Jaini, A Lyubetskaya, A Gomes, M Peterson, ST Park, S Raman, ... MGM2-0035-2013, 2014 | 5 | 2014 |
Marc ColosimoSenior Customer Solutions Architect at Paradigm4Verified email at paradigm4.com
