Ali Cakmak
Ali Cakmak
Assoc. Prof. of Computer Science, Istanbul Technical University
Verified email at - Homepage
Cited by
Cited by
PathCase: pathways database system
B Elliott, M Kirac, A Cakmak, G Yavas, S Mayes, E Cheng, Y Wang, ...
Bioinformatics 24 (21), 2526-2533, 2008
Mining biological networks for unknown pathways
A Cakmak, G Ozsoyoglu
Bioinformatics 23 (20), 2775-2783, 2007
High impact academic paper prediction using temporal and topological features
F Davletov, AS Aydin, A Cakmak
Proceedings of the 23rd ACM International Conference on Conference on†…, 2014
Context-based literature digital collection search
N Ratprasartporn, J Po, A Cakmak, S Bani-Ahmad, G Ozsoyoglu
The VLDB Journal 18 (1), 277-301, 2009
Taxonomy-superimposed graph mining
A Cakmak, G Ozsoyoglu
Proceedings of the 11th international conference on Extending database†…, 2008
Evaluating Publication Similarity Measures.
S Bani-Ahmad, A Cakmak, G ÷zsoyoglu, A Al-Hamdani
IEEE Data Eng. Bull. 28 (4), 21-28, 2005
Annotating genes using textual patterns
A Cakmak, G Ozsoyoglu
Biocomputing 2007, 221-232, 2007
PathCase-SB architecture and database design
A Cakmak, X Qi, SA Coskun, M Das, E Cheng, AE Cicek, N Lai, ...
BMC systems biology 5 (1), 1-17, 2011
A new metabolomics analysis technique: steady-state metabolic network dynamics analysis
A Cakmak, X Qi, AE Cicek, I Bederman, L Henderson, M Drumm, ...
Journal of bioinformatics and computational biology 10 (01), 1240003, 2012
Discovering gene annotations in biomedical text databases
A Cakmak, G Ozsoyoglu
BMC bioinformatics 9 (1), 1-17, 2008
Gene ontology-based annotation analysis and categorization of metabolic pathways
A Cakmak, M Kirac, MR Reynolds, ZM Ozsoyoglu, G Ozsoyoglu
19th International Conference on Scientific and Statistical Database†…, 2007
Computational Modeling of Pass Effectiveness in Soccer
A Cakmak, A Uzun, E Delibas
Advances in Complex Systems 21 (3-4), 2018
An online system for metabolic network analysis
AE Cicek, X Qi, A Cakmak, SR Johnson, X Han, S Alshalwi, ...
Database 2014, 2014
PathCase-SB: integrating data sources and providing tools for systems biology research
SA Coskun, X Qi, A Cakmak, E Cheng, AE Cicek, L Yang, R Jadeja, ...
BMC systems biology 6 (1), 1-20, 2012
Analyzing metabolite measurements for automated prediction of underlying biological mechanisms
A Cakmak, A Dsouza, RW Hanson, M Ozsoyoglu
Proceedings of the First ACM International Conference on Bioinformatics and†…, 2010
Evaluating score and publication similarity functions in digital libraries
S Bani-Ahmad, A Cakmak, A Al-Hamdani, G Ozsoyoglu
International Conference on Asian Digital Libraries, 483-485, 2005
Creating and using data that indicates misestimates of actual costs
SP Chakkappen, M Zait, AW Lee, A Cakmak
US Patent 9,471,631, 2016
Advanced querying interface for biochemical network databases
B Elliott, S Mayes, A Cakmak, G Ozsoyoglu, ZM Ozsoyoglu
Proceedings of the 2010 ACM Symposium on Applied Computing, 1526-1533, 2010
Querying metabolism under different physiological constraints
A Cakmak, G Ozsoyoglu, RW Hanson
Journal of bioinformatics and computational biology 8 (02), 247-293, 2010
Evaluating different ranking functions for context-based literature search
N Ratprasartporn, S Bani-Ahmad, A Cakmak, J Po, G Ozsoyoglu
2007 IEEE 23rd International Conference on Data Engineering Workshop, 261-268, 2007
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