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Leena Salmela
Leena Salmela
Verified email at cs.helsinki.fi - Homepage
Title
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Cited by
Year
LoRDEC: accurate and efficient long read error correction
L Salmela, E Rivals
Bioinformatics 30 (24), 3506-3514, 2014
7212014
The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera
V Ahola, R Lehtonen, P Somervuo, L Salmela, P Koskinen, P Rastas, ...
Nature communications 5 (1), 4737, 2014
2352014
Correcting errors in short reads by multiple alignments
L Salmela, J Schröder
Bioinformatics 27 (11), 1455-1461, 2011
2172011
Accurate self-correction of errors in long reads using de Bruijn graphs
L Salmela, R Walve, E Rivals, E Ukkonen
Bioinformatics 33 (6), 799-806, 2017
1482017
Correction of sequencing errors in a mixed set of reads
L Salmela
Bioinformatics 26 (10), 1284-1290, 2010
1482010
Multipattern string matching with q-grams
L Salmela, J Tarhio, J Kytöjoki
Journal of Experimental Algorithmics (JEA) 11, 1.1-es, 2007
1212007
Fast scaffolding with small independent mixed integer programs
L Salmela, V Mäkinen, N Välimäki, J Ylinen, E Ukkonen
Bioinformatics 27 (23), 3259-3265, 2011
1002011
Normalized N50 assembly metric using gap-restricted co-linear chaining
V Mäkinen, L Salmela, J Ylinen
BMC bioinformatics 13, 1-5, 2012
472012
Bit-parallel search algorithms for long patterns
B Ďurian, H Peltola, L Salmela, J Tarhio
Experimental Algorithms: 9th International Symposium, SEA 2010, Ischia …, 2010
422010
Flight‐induced changes in gene expression in the Glanville fritillary butterfly
J Kvist, ALK Mattila, P Somervuo, V Ahola, P Koskinen, L Paulin, ...
Molecular Ecology 24 (19), 4886-4900, 2015
402015
mpscan: Fast Localisation of Multiple Reads in Genomes
E Rivals, L Salmela, P Kiiskinen, P Kalsi, J Tarhio
Algorithms in Bioinformatics: 9th International Workshop, WABI 2009 …, 2009
342009
Tuning string matching for huge pattern sets
J Kytöjoki, L Salmela, J Tarhio
Combinatorial Pattern Matching: 14th Annual Symposium, CPM 2003 Morelia …, 2003
322003
Gap filling as exact path length problem
L Salmela, K Sahlin, V Mäkinen, AI Tomescu
Journal of Computational Biology 23 (5), 347-361, 2016
292016
Forbidden patterns
J Fischer, T Gagie, T Kopelowitz, M Lewenstein, V Mäkinen, L Salmela, ...
Latin American Symposium on Theoretical Informatics, 327-337, 2012
282012
String matching with alphabet sampling
F Claude, G Navarro, H Peltola, L Salmela, J Tarhio
Journal of Discrete Algorithms 11, 37-50, 2012
282012
Approximate Boyer-Moore string matching for small alphabets
L Salmela, J Tarhio, P Kalsi
Algorithmica 58, 591-609, 2010
222010
Fast parameterized matching with q-grams
L Salmela, J Tarhio
Journal of Discrete Algorithms 6 (3), 408-419, 2008
222008
Indexing variable length substrings for exact and approximate matching
G Navarro, L Salmela
International Symposium on String Processing and Information Retrieval, 214-221, 2009
212009
Graphchainer: Colinear chaining for accurate alignment of long reads to variation graphs
J Ma, M Cáceres, L Salmela, V Mäkinen, AI Tomescu
bioRxiv, 2022
17*2022
Error correcting optical mapping data
K Mukherjee, D Washimkar, MD Muggli, L Salmela, C Boucher
GigaScience 7 (6), giy061, 2018
172018
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